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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGGTCAAGAATCAAATGGAATTTCACAAAGTTTTTAGTCGATGAGGAAGGCCGTGTCATCCAACGTTATAGCCCAACCACCAAGCCATTAGCCATTGAAgtactctctctctctctctctctctctctctcatgcatgtgaaatactagaagggagaacgctaattattaagaaattaaaaatatttttaatataatac...

Basic information

species Glycine max
transcript GLYMA02G16800.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|38192369|gb|CF921575.1|CF921575
EST:     GCCGTGTCATCCAACGTTATAGCCCAACCACCAAGCCATTAGCCATTGAA                         AATGATATCAAGAAGGCATTGCGGGTGGCTTGAAAGACGACTGCACAATTA
genomic: GCCGTGTCATCCAACGTTATAGCCCAACCACCAAGCCATTAGCCATTGAAgtactctctc ... tctttgacagAATGATATCAAGAAGGCATTGCGGGTGGCTTGAAAGACGACTGCACAATTA
EST: gi|38193656|gb|CF922862.1|CF922862
EST:     GCCGTGTCATCCAACGTTATAGCCCAACCACCAAGCCATTAGCCATTGAA                         AATGATATCAAGAAGGCATTGCGGGTGGCTTGAAAGACGACTGCACAATTA
genomic: GCCGTGTCATCCAACGTTATAGCCCAACCACCAAGCCATTAGCCATTGAAgtactctctc ... tctttgacagAATGATATCAAGAAGGCATTGCGGGTGGCTTGAAAGACGACTGCACAATTA
EST: gi|192331125|gb|FK020345.1|FK020345
EST:     GCCGTGTCATCCAACGTTATAGCCCAACCACCAAGCCATTAGCCATTGAA                         AATGATATCAAGAAG-CATTGCGGGTGGCTTGAAAGACGACTGCACAATTA
genomic: GCCGTGTCATCCAACGTTATAGCCCAACCACCAAGCCATTAGCCATTGAAgtactctctc ... tctttgacagAATGATATCAAGAAGGCATTGCGGGTGGCTTGAAAGACGACTGCACAATTA
EST: gi|38193508|gb|CF922714.1|CF922714
EST:     GCCGTGTCATCCAACGTTATAGCCCAACCACCAAGCCATTAGCCATTGAA                         AATGATATCAAGAAGGCATTGCGGGTGGCTTGAAAGACGACTGCACAATTA
genomic: GCCGTGTCATCCAACGTTATAGCCCAACCACCAAGCCATTAGCCATTGAAgtactctctc ... tctttgacagAATGATATCAAGAAGGCATTGCGGGTGGCTTGAAAGACGACTGCACAATTA
EST: gi|38192642|gb|CF921848.1|CF921848
EST:     GCCGTGTCATCCAACGTTATAGCCCAACCACCAAGCCATTAGCCATTGAA                         AATGATATCAAGAAGGCATTGCGGGTGGCTTGAAAGACGACTGCACAATTA
genomic: GCCGTGTCATCCAACGTTATAGCCCAACCACCAAGCCATTAGCCATTGAAgtactctctc ... tctttgacagAATGATATCAAGAAGGCATTGCGGGTGGCTTGAAAGACGACTGCACAATTA
EST: gi|38193765|gb|CF922971.1|CF922971
EST:     GCCGTGTCATCCAACGTTATAGCCCAACCACCAAGCCATTAGCCATTGAA                         AATGATATCAAGAAGGCATTGCGGGTGGCTTGAAAGACGACTGCACAATTA
genomic: GCCGTGTCATCCAACGTTATAGCCCAACCACCAAGCCATTAGCCATTGAAgtactctctc ... tctttgacagAATGATATCAAGAAGGCATTGCGGGTGGCTTGAAAGACGACTGCACAATTA
EST: gi|151408599|gb|EV278407.1|EV278407
EST:     GCCGTGTCATCCAACGTTATAGCCCAACCACCAAGCCATTAGCCATTGAA                         AATGATATCAAGAAGGCATTGCGGGTGGCTTGAAAGACGACTGCACAATTA
genomic: GCCGTGTCATCCAACGTTATAGCCCAACCACCAAGCCATTAGCCATTGAAgtactctctc ... tctttgacagAATGATATCAAGAAGGCATTGCGGGTGGCTTGAAAGACGACTGCACAATTA
EST: gi|38191657|gb|CF920863.1|CF920863
EST:     GCCGTGTCATCCAACGTTATAGCCCAACCACCAAGCCATTAGCCATTGAA                         AATGATATCAAGAAGGCATTGCGGGTGGCTTGAAAGACGACTGCACAATTA
genomic: GCCGTGTCATCCAACGTTATAGCCCAACCACCAAGCCATTAGCCATTGAAgtactctctc ... tctttgacagAATGATATCAAGAAGGCATTGCGGGTGGCTTGAAAGACGACTGCACAATTA
EST: gi|41146473|gb|CK606684.1|CK606684
EST:     GCCGTGTCATCCAACGTTATAGCCCAACCACCAAGCCATTAGCCATTGAA                         AATGATATCAAGAAGGCATTGCGGGTGGCTTGAAAGACGACTGCACAATTA
genomic: GCCGTGTCATCCAACGTTATAGCCCAACCACCAAGCCATTAGCCATTGAAgtactctctc ... tctttgacagAATGATATCAAGAAGGCATTGCGGGTGGCTTGAAAGACGACTGCACAATTA
EST: gi|16344874|gb|BI970469.1|BI970469
EST:     GCCGTGTCATCCAACGTTATAGCCCAACCACCAAGCCATTAGCCATTGAA                         AATGATATCAAGAAGGCATTGCGGGTGGCTTGAAAGACGACTGCACAATTA
genomic: GCCGTGTCATCCAACGTTATAGCCCAACCACCAAGCCATTAGCCATTGAAgtactctctc ... tctttgacagAATGATATCAAGAAGGCATTGCGGGTGGCTTGAAAGACGACTGCACAATTA
EST: gi|38192866|gb|CF922072.1|CF922072
EST:     GCCGTGTCATCCAACGTTATAGCCCAACCACCAAGCCATTAGCCATTGAA                         AATGATATCAAGAAGGCATTGCGGGTGGCTTGAAAGACGACTGCACAATTA
genomic: GCCGTGTCATCCAACGTTATAGCCCAACCACCAAGCCATTAGCCATTGAAgtactctctc ... tctttgacagAATGATATCAAGAAGGCATTGCGGGTGGCTTGAAAGACGACTGCACAATTA
EST: gi|38192483|gb|CF921689.1|CF921689
EST:     GCCGTGTCATCCAACGTTATAGCCCAACCACCAAGCCATTAGCCATTGAA                         AATGATATCAAGAAGGCATTGCGGGTGGCTTGAAAGACGACTGCACAATTA
genomic: GCCGTGTCATCCAACGTTATAGCCCAACCACCAAGCCATTAGCCATTGAAgtactctctc ... tctttgacagAATGATATCAAGAAGGCATTGCGGGTGGCTTGAAAGACGACTGCACAATTA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGGGTCAAGAATCAAATGGAATTTCACAAAGTTTTTAGTCGATGAGGAAGGCCGTGTCATCCAACGTTATAGCCCAACCACCAAGCCATTAGCCATTGAAgtactctctctctctctctctctctctctctcatgcatgtgaaatactagaagggagaacgctaattattaagaaattaaaaatatttttaatataatac

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