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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACTTAGGCCTGGAGTCTGTTGGTGTGAAACTAGCTAAAGATGGAGCTATAGAGgtagtttaagcttaccactggttctatttaatatatattcatatgatctttgtctcacttatacttcctaaaactcttcttcaacccag

Basic information

species Glycine max
transcript GLYMA02G16010.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192311298|gb|FK003769.1|FK003769
EST:     GAAACTAGCTAAAGATGGAGCTATAGAG                         GTTGATGAATACTCTCAAACATCAGTTTCTTCAATTTGGGCAGTTGGAGAT
genomic: GAAACTAGCTAAAGATGGAGCTATAGAGgtagtttaag ... ttcaacccagGTTGATGAATACTCTCAAACATCAGTTTCTTCAATTTGGGCAGTTGGAGAT
EST: gi|10237572|gb|BE806460.1|BE806460
EST:     TAGGCCTGGAGTCTGTTGGTGTGAAACTAGCTAAAGATGGAGCTATAGAG                         GTTGATGAATACTCTCAAACATCAGTTTCTTCAATTTGGGCAGTTGGAGAT
genomic: TAGGCCTGGAGTCTGTTGGTGTGAAACTAGCTAAAGATGGAGCTATAGAGgtagtttaag ... ttcaacccagGTTGATGAATACTCTCAAACATCAGTTTCTTCAATTTGGGCAGTTGGAGAT
EST: gi|192318300|gb|FK005804.1|FK005804
EST:     TAGGCCTGGAGTCTGTTGGTGTGAAACTAGCCAAAGATGGAGCTATAGAG                         GTTGATGAATACTCTCAAACATCAGTTTCTTCAATTTGGGCAGTTGGAGAT
genomic: TAGGCCTGGAGTCTGTTGGTGTGAAACTAGCTAAAGATGGAGCTATAGAGgtagtttaag ... ttcaacccagGTTGATGAATACTCTCAAACATCAGTTTCTTCAATTTGGGCAGTTGGAGAT
EST: gi|19346748|gb|BM891628.1|BM891628
EST:     TAGGCCTGGAGTCTGTTGGTGTGAAACTAGCTAAAGATGGAGCTATAGAG                         GTTGATGAATACTCTCAAACATCAGTTTCTTCAATTTGGGCAGTTGGAGAT
genomic: TAGGCCTGGAGTCTGTTGGTGTGAAACTAGCTAAAGATGGAGCTATAGAGgtagtttaag ... ttcaacccagGTTGATGAATACTCTCAAACATCAGTTTCTTCAATTTGGGCAGTTGGAGAT
EST: gi|151396456|gb|EV266333.1|EV266333
EST:     TAGGCCTGGAGTCTGTTGGTGTGAAACTAGCTAAAGATGGAGCTATAGAG                         GTTGATGAATACTCTCAAACATCAGTTTCTCCAATTTGGGCAGTTGGAGAT
genomic: TAGGCCTGGAGTCTGTTGGTGTGAAACTAGCTAAAGATGGAGCTATAGAGgtagtttaag ... ttcaacccagGTTGATGAATACTCTCAAACATCAGTTTCTTCAATTTGGGCAGTTGGAGAT
EST: gi|192314162|gb|FK011534.1|FK011534
EST:     TAGGCCTGGAGTCTGTTGGTGTGAAACTAGCTAAAGATGGAGCTATAGAG                         GTTGATGAATACTCTCAAACATCAGTTTCTTCAATTTGGGCAGTTGGAGAT
genomic: TAGGCCTGGAGTCTGTTGGTGTGAAACTAGCTAAAGATGGAGCTATAGAGgtagtttaag ... ttcaacccagGTTGATGAATACTCTCAAACATCAGTTTCTTCAATTTGGGCAGTTGGAGAT
EST: gi|37995669|gb|CF807258.1|CF807258
EST:     TAGGCCTGGAGTCTGTTGGTGTGAAACTAGCTAAAGATGGAGCTATAGAG                         GTTGATGAATACTCTCAAACATCAGTTTCTTCAATTTGGGCAGTTGGAGAT
genomic: TAGGCCTGGAGTCTGTTGGTGTGAAACTAGCTAAAGATGGAGCTATAGAGgtagtttaag ... ttcaacccagGTTGATGAATACTCTCAAACATCAGTTTCTTCAATTTGGGCAGTTGGAGAT
EST: gi|10231243|gb|BE800059.1|BE800059
EST:     AGGCCTGTAGTCTGTTGGTGTGAAACTAGCTTAAGATGGAGCTATAGATG                         GT-GATGAATACTCTCAAACATCAGTCTCTTC
genomic: AGGCCTGGAGTCTGTTGGTGTGAAACTAGCTAAAGATGGAGCTATAGA-Ggtagtttaag ... ttcaacccagGTTGATGAATACTCTCAAACATCAGTTTCTTC
EST: gi|7924612|gb|AW830638.1|AW830638
EST:     TAGGCCTGGAGTCTGTTGGTGTGAAACTAGCTAAAGATGGAGCTATAGAG                         GTTGATGAATACTCTCAAACATCAGTTTCTTCAATTTGGGCAGTTGGAGAT
genomic: TAGGCCTGGAGTCTGTTGGTGTGAAACTAGCTAAAGATGGAGCTATAGAGgtagtttaag ... ttcaacccagGTTGATGAATACTCTCAAACATCAGTTTCTTCAATTTGGGCAGTTGGAGAT
EST: gi|8283020|gb|BE020581.1|BE020581
EST:     TAGGCCTGGAGTCTGTTGGTGTGAAAATAGCTAAAGATGGAGCTATAGAG                         GTTGATGAATACTCTCAAACATCAGTTCCTTCAATTTGGGCAGTTGGAGAT
genomic: TAGGCCTGGAGTCTGTTGGTGTGAAACTAGCTAAAGATGGAGCTATAGAGgtagtttaag ... ttcaacccagGTTGATGAATACTCTCAAACATCAGTTTCTTCAATTTGGGCAGTTGGAGAT
EST: gi|254323695|gb|GR836034.1|GR836034
EST:     TAGGCCTGGAGTCTGTTGGTGTGAAACTAGCTAAAGATGGAGCTATAGAG                         GTTGATGAATACTCTCAAACATCAGTTTCTTCAATTTGGGCAGTTGGAGAT
genomic: TAGGCCTGGAGTCTGTTGGTGTGAAACTAGCTAAAGATGGAGCTATAGAGgtagtttaag ... ttcaacccagGTTGATGAATACTCTCAAACATCAGTTTCTTCAATTTGGGCAGTTGGAGAT
EST: gi|192318301|gb|FK005805.1|FK005805
EST:     TAGGCCTGGAGTCTGTTGGTGTGAAACTAGCCAAAGATGGAGCTATAGAG                         GTTGATGAATACTCTCAAACATCAGTTTCTTCAATTTGGGCAGTTGGAGAT
genomic: TAGGCCTGGAGTCTGTTGGTGTGAAACTAGCTAAAGATGGAGCTATAGAGgtagtttaag ... ttcaacccagGTTGATGAATACTCTCAAACATCAGTTTCTTCAATTTGGGCAGTTGGAGAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AACTTAGGCCTGGAGTCTGTTGGTGTGAAACTAGCTAAAGATGGAGCTATAGAGgtagtttaagcttaccactggttctatttaatatatattcatatgatctttgtctcacttatacttcctaaaactcttcttcaacccag

- - - - - - - - - - - - - - - - - -  AAGATG
- - - - - - - - - - - - - - - - - - -  GATGGA
- - - - - - - - - - - - - - - - - - - - - GGAGCT