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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAAATTGAAATTAGGGGATATTAAAGGAGCATTGTTGGATACAGAATTTGCAATGCGTGAGGGAGACAACAATGCTAAAGCTTTGTTCCGCCAAGGACAGgttggtattggaattgaagagcttgcagtcaaatgtttggagcttttgttacactttattgtgtctgtctatctgttactatggtatttaatgcttcctgcttttaactctggtaactatgttattgccaatttaccag

Basic information

species Glycine max
transcript GLYMA02G15250.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G15250.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G329306_T01 (Zea mays), 5'ss of exon 5
TAAATTGAAATTAGGGGATATTAAAGGAGCATTGTTGGATACAGAATTTGCAATGCGTGAGGGAGACAACAATGCTAAAGCTTTGTTCCGCCAAGGACAGgttggtattggaattgaagagcttgcagtcaaatgtttggagcttttgttacactttattgtgtctgtctatctgttactatggtatttaatgcttcctgcttttaactctggtaactatgttattgccaatttaccag
 ||||| || ||||| |||   |  || || || || ||  |||| |||||| |||||||  | ||    |||||||||||||| ||||| |||||||||||||| |              |||   |||| ||  || |   |  ||||  |||  ||  || | ||     | |  ||   ||    ||  ||| |   || | | | |  |                         
CAAATTAAAGTTAGGAGATTCAAGTGGGGCTTTATTAGACGCAGATTTTGCACTGCGTGAAAGGGAGGGAAATGCTAAAGCTTTTTTCCGACAAGGACAGgttggca-------------actttt-gtcatataatttgttttgctgttg-actacatgctgccggtgacattctagcttaagttcaaaacacttgcgttttatgattgttctc------------------------

upper sequence: GLYMA02G15250.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv03s0063g01030.t01 (Vitis vinifera), 5'ss of exon 5
TAAATTGAAATTAGGGGATATTAAAGGAGCATTGTTGGATACAGAATTTGCAATGCGTGAGGGAGACAACAATGCTAAAGCTTTGTTCCGCCAAGGACAGgttggtattgg--aattga-agagcttgcagtca----aatgtttggagcttttgttacactttattgtgtctgtctatctgttactatggtatttaatgcttcctgcttttaactctggtaactatgttattgccaatttaccag
|||| |||||||||| ||| | |||||||| |||||||| ||||| |||||||||||||| |  || |||||||  |||||||| |  |||||||| |||||| ||||     || ||| |  | || || |||     | | | ||||||||  ||    ||| |  | |  |    || |     |||        ||| |||| ||                                     
TAAACTGAAATTAGGAGATTTGAAAGGAGCCTTGTTGGACACAGACTTTGCAATGCGTGATGAGGAGAACAATGTGAAAGCTTTATATCGCCAAGGCCAGgtttgtatcaatcaagtgataaggatttcaatcactaggaggataggagctttacttg---tttgtgatcttagctggtcagcacacatgt------gtgcatccttct-------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15204315|gb|BI427083.1|BI427083
EST:     CAATGCGTGAGGGAGACAACAATGCTAAAGCTTTGTTCCGCCAAGGACAG                         GCATACATGGCACTCCATGACATTGATGCTGCAGTTGAAAGCTTTAAGAAG
genomic: CAATGCGTGAGGGAGACAACAATGCTAAAGCTTTGTTCCGCCAAGGACAGgttggtattg ... aatttaccagGCATACATGGCACTCCATGACATTGATGCTGCAGTTGAAAGCTTTAAGAAG
EST: gi|207682474|gb|GD664831.1|GD664831
EST:     CAATGCGTGAGGGAGACAACAATGCTAAAGCTTTGTTCCGCCAAGGACAG                         GCATACATGGCACTCCATGACATTGATGCTGCAGTTGAAAGCTTTAAGAAG
genomic: CAATGCGTGAGGGAGACAACAATGCTAAAGCTTTGTTCCGCCAAGGACAGgttggtattg ... aatttaccagGCATACATGGCACTCCATGACATTGATGCTGCAGTTGAAAGCTTTAAGAAG
EST: gi|120496303|gb|EH224470.1|EH224470
EST:     CAATGCGTGAGGGAGACAACAATGCTAAAGCTTTGTTCCGCCAAGGACAG                         GCATACATGGCACTCCATGACATTGATGCTGCAGTTGAAAGCTTTAAGAAG
genomic: CAATGCGTGAGGGAGACAACAATGCTAAAGCTTTGTTCCGCCAAGGACAGgttggtattg ... aatttaccagGCATACATGGCACTCCATGACATTGATGCTGCAGTTGAAAGCTTTAAGAAG
EST: gi|7233363|gb|AW568710.1|AW568710
EST:     CAATGCGTGAGGGAGACAACAATGCTAAAGCTTTGTTCCGCCAAGGACAG                         GCATACATGGCACTCCATGACATTGATGCTGCAGTTGAAAGCTGTAAGAAG
genomic: CAATGCGTGAGGGAGACAACAATGCTAAAGCTTTGTTCCGCCAAGGACAGgttggtattg ... aatttaccagGCATACATGGCACTCCATGACATTGATGCTGCAGTTGAAAGCTTTAAGAAG
EST: gi|193682513|gb|FK624227.1|FK624227
EST:     CAATGCGTGAGGGAGACAACAATGCTAAAGCTTTGTTCCGCCAAGGACAG                         GCATACATGGCACTCCATGACATTGACGCTGCAGTTGAAAGCTTTAAGAAG
genomic: CAATGCGTGAGGGAGACAACAATGCTAAAGCTTTGTTCCGCCAAGGACAGgttggtattg ... aatttaccagGCATACATGGCACTCCATGACATTGATGCTGCAGTTGAAAGCTTTAAGAAG
EST: gi|57575694|gb|CX548669.1|CX548669
EST:     CAATGCGTGAGGGAGACAACAATGCTAAAGCTTTGTTCCGCCAAGGACAG                         GCATACATGGCACTCCATGACATTGATGCTGCAGTTGAAAGCTTTAAGAAG
genomic: CAATGCGTGAGGGAGACAACAATGCTAAAGCTTTGTTCCGCCAAGGACAGgttggtattg ... aatttaccagGCATACATGGCACTCCATGACATTGATGCTGCAGTTGAAAGCTTTAAGAAG