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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGAGGAGATCAAAGAACTTTGGGAAGAGTATGAAAACAATTCTTCTGTAGAGGCAAATCTTGTTAAGGATTTTGACAAGgtacacatgctatctaatatggaggtgcccattatgtgtgagtctggatgttgaaatcaaaattaacatggttttaggttatggactatttttgcagtag...

Basic information

species Glycine max
transcript GLYMA02G14300.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G14300.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv01s0011g02440.t01 (Vitis vinifera), 5'ss of exon 11
CTGAGGAGATCAAAGAACTTTGGGAAGAGTATGAAAACAATTCTTCTGTAGAGGCAAATCTTGTTAAGGATTTTGACAAGgtacacatgctatctaatatggaggtgcccattatgtgtgagtctg--gatgttga--aatcaaaattaacatgg--ttttaggttatggactatttttgcagtag-
 ||| ||| | |||||||||||||| ||||||||||| || |||||  ||||||| |||||||| || |||||||| || ||| ||||   |||||  ||     ||   |   | | | | | ||  ||  || |  ||| |  | | | |||   |||||  |  | ||        |  || | 
TTGAAGAGTTTAAAGAACTTTGGGAGGAGTATGAAAATAACTCTTCCTTAGAGGCTAATCTTGTAAAAGATTTTGAAAAAgtatacat--catctagcatt----tgtttaaggttt-taaatttgatgacattaaccaattagcaatcatatgaacttttaaatcttagaaatgacaagaggttgt

upper sequence: GLYMA02G14300.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv01s0011g02430.t01 (Vitis vinifera), 5'ss of exon 5
CTGAGGAGATCAAAGAACTTTGGGAAGAGTATGAAAACAATTCTTCTGTAGAGGCAAATCTTGTTAAGGATTTTGACAAGgtacacatgctatctaatatggaggtgcccattatgtgtgagtctg-gatgttga--aatcaaaattaacatgg--ttttaggttatggactatttttgcagtag-
|||| |||||||||||||| ||||| ||||||||||| || |||||  ||||||| |||||||| || ||||||||||| |||  |||   |||||  ||     ||   |   | |   | | |  ||| || |  ||| |  | | | |||   |||||  |  | ||        | ||  | 
CTGACGAGATCAAAGAACTATGGGAGGAGTATGAAAATAACTCTTCCTTAGAGGCTAATCTTGTAAAAGATTTTGACAAAgtatgcat--catctagcatt----tgtataaggttttaaattttatgatattaaccaattagcaatcatatgaacttttaaatcttagaaatgacaagaaggtgt

upper sequence: GLYMA02G14300.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv01s0011g02440.t01 (Vitis vinifera), 5'ss of exon 6
CTGAGGAGATCAAAGAACTTTGGGAAGAGTATGAAAACAATTCTTCTGTAGAGGCAAATCTTGTTAAGGATTTTGACAAGgtacacatgctatctaatatggaggtgcccattatgtgtgagtctggatgttgaaatcaaaatta-acatggttttaggttatggactatttttgcagtag-
 ||| ||| | |||||||||||||| ||||||||||| || |||||  ||||||| |||||||| || |||||||| || |||| |||   |||||  ||     ||    ||     |   |     |    || |   ||| | | |   |||||  |  | ||        |  |  | 
TTGAAGAGTTTAAAGAACTTTGGGAGGAGTATGAAAATAACTCTTCCTTAGAGGCTAATCTTGTAAAAGATTTTGAAAAAgtacgcat--catctagcatttgtatgaggttttaaattttatgacattaaccaattagcaatcatataaacttttaaatcttagaaatgacaagagggtgt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|62531354|gb|DN828683.1|DN828683
EST:     ATGAAAACAATTCTTCTGTAGAGGCAAATCTTGTTAAGGATTTTGACAAG                         GTTGAGATGATTTTGCAAGCTCTGGAATATGAAATAG
genomic: ATGAAAACAATTCTTCTGTAGAGGCAAATCTTGTTAAGGATTTTGACAAGgtacacatgc ... ttcggatcagGTTGAGATGATTCTGCAAGCTCTGGAATATGAAATAG
EST: gi|61996841|gb|DN676662.1|DN676662
EST:     ATGAAAACAATTCTTCTGTAGAGGCAAATCTTGTTAAGGATTTTGACAAG                         GTTGAGATGATTCTGCAAGCTCTGGAATATGAAATAG
genomic: ATGAAAACAATTCTTCTGTAGAGGCAAATCTTGTTAAGGATTTTGACAAGgtacacatgc ... ttcggatcagGTTGAGATGATTCTGCAAGCTCTGGAATATGAAATAG
EST: gi|51344946|gb|CO985679.1|CO985679
EST:     ATGAAAACAATTCTTCTGTAGAGGCAAATCTTGTTAAGGATTTTGACAAG                         GTTGAGATGATTCTGCAAGCTCTGGAATATGAAATAG
genomic: ATGAAAACAATTCTTCTGTAGAGGCAAATCTTGTTAAGGATTTTGACAAGgtacacatgc ... ttcggatcagGTTGAGATGATTCTGCAAGCTCTGGAATATGAAATAG
EST: gi|12689507|gb|BG155843.1|BG155843
EST:     ATGAAAACAATTCTTCTGTAGAGGCAAATCTTGTTAAGGATTTTGACAAG                         GTTGAGATGATTCTGCAAGCTCTGGAATATGAAATAG
genomic: ATGAAAACAATTCTTCTGTAGAGGCAAATCTTGTTAAGGATTTTGACAAGgtacacatgc ... ttcggatcagGTTGAGATGATTCTGCAAGCTCTGGAATATGAAATAG