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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAGGCATTTATCGAGCCAGATCTCCAGACAGCACACATAAAAATCATCAACAAATTCAATCCATTTACTGGATTCCAGAGTCCTACTTACATATTAAAGgtaataactcattattttaaatccacttgtataaatgaaaggaggaaaaacggatagttctgttggttctgatgttgatgtgtgacatcttaatgaaaaatcctttgtataactgttctag

Basic information

species Glycine max
transcript GLYMA02G14110.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G14110.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os02g47860.2 (Oryza sativa), 5'ss of exon 5
CAAGGCATTTATCGAGCCAGATCTCCAGACAGCACACATAAAAATCATCAACAAATTCAATCCATTTACTGGATTCCAGAGTCCTACTTACATATTAAAGgtaataactcattattttaaatccact---tgtataaatgaaaggaggaaaaacggatagttctgttggttctgatgttgatgtgtgacatcttaatgaaaaatcctttgtataactgttctag--------------------------------
 ||||| || || ||||||||  | ||||||||||| |||||||| |||||||| ||||| |||||  | || ||||| | |||||  |||||  |||||||||  |||| ||||||    |||  |   |||  |  |    | | ||     |   | |  | |     |  ||       | | | ||  |||| || | |  | | | |   |  |||||                                
TAAGGCTTTCATTGAGCCAGACTTGCAGACAGCACATATAAAAATAATCAACAAGTTCAACCCATTCTCAGGGTTCCAAAATCCTATGTACATTCTAAAGgtaagcactccttatttatgttccttttagtgtccatgttttggcaagatggctgatcattgatctcttcaccaatagcataatttta-atactaataaatacttgtct-tgtggtttatctagatggcctaacttttggaaatgtactcttgcag

upper sequence: GLYMA02G14110.1 (Glycine max), 5'ss of exon 5
lower sequence: AT1G26190.1 (Arabidopsis thaliana), 5'ss of exon 5
CAAGGCATTTATCGAGCCAGATCTCCAGACAGCACACATAAAAATCATCAACAAATTCAATCCATTTACTGGATTCCAGAGTCCTACTTACATATTAAAGgt--aataactcattat-tttaaatccacttgtataaatgaaaggaggaaaaacggatagttctgttggttctgatgttgatgtgtgacatcttaatgaaaaatcctttg-tataact--gttctag
||| || || || ||||||||||||||||| || || || |||||||| || |||||||| || || ||||| || ||||| || |||||||| || |||||   | || | |     |||  |||||  |    | || ||     |     | |  |  || ||   |||   | ||||   | |     |||||  ||  || |||  ||| |||  ||| |||
CAAAGCTTTCATTGAGCCAGATCTCCAGACTGCTCAAATCAAAATCATTAATAAATTCAACCCCTTCACTGGTTTTCAGAGCCCGACTTACATCTTGAAGgtttgaaaagtgaccggatttctatccatcttatcatattaatcagtgct---ctgcaaactcagt--attcaactattgaca-gcgtttggttaattgaagttcttttactattactttgttgtag

upper sequence: GLYMA02G14110.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv01s0010g01080.t01 (Vitis vinifera), 5'ss of exon 4
CAAGGCATTTATCGAGCCAGATCTCCAGACAGCACACATAAAAATCATCAACAAATTCAATCCATTTACTGGATTCCAGAGTCCTACTTACATATTAAAGgt-aataactcattattttaaatccacttgtataaatgaaaggaggaaaaacggatagttctgttggttctgatgttgatgtgtgac-atcttaatgaaaaatcctttgtataactgttctag
|||||| ||||| ||||||||||||   |||||||| |||||||||| ||| || ||||| ||||| |||||||| |||||||| ||||| || || ||||| | |  |  ||||||||      ||| ||    ||         || |||  | ||||   |||||   ||  |  || | || | || | | |||    |      ||||| |||     
CAAGGCTTTTATTGAGCCAGATCTCGGAACAGCACATATAAAAATCACCAATAAGTTCAACCCATTCACTGGATTTCAGAGTCCCACTTATATTTTGAAGgtcagtgcccaattatttt---cttactggtcaccat---------aataaccaaaagtttctttggtctggagctatatctttgtccatgtcactgagtggtaac---tataattgtag---