1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TTCTTGCAAGTTCTTCATATATATTGGTGGGTTCTGATGCTTAGGATGCTTGTTAAACAAATCCAAGAAAAAGGAAAAGTTAGTGAAGATATCCGATCTGgtaagctgaatgatgcactaaatatatgcctttctaagatgaactttttatgcattatgtcagaaaatattaacttgatgctgatgatccctatccatgtagcctcgggttttgaagtggccttactcaatagaaattttaacttgttatctgattgtaatctgtttcacatcacattttcgttatgcag
species | Glycine max |
transcript | GLYMA02G14040.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AACAAATCCAAGAAAAAGGAAAAGTTAGTGAAGATATCCGATCTG ATTCAGAAGATGAAGATGAACATAAACATGAAGAATGAACAGAAAAACAAGEST: gi|209704152|gb|BW664770.1|BW664770
genomic: AACAAATCCAAGAAAAAGGAAAAGTTAGTGAAGATATCCGATCTGgtaagctgaa ... cgttatgcagATTCAGAAGATGAAGATGAACATAAACATGAAGAATGAACAGAAAAACAAG
EST: TGTTAAACAAATCCAAGAAAAAGGAAAAGTTAGTGAAGATATCCGATCTG ATTCAGAAGATGAAGATGAACATAAACATGAAGAATGAACAGAAAAACAAGEST: gi|192315081|gb|FK010451.1|FK010451
genomic: TGTTAAACAAATCCAAGAAAAAGGAAAAGTTAGTGAAGATATCCGATCTGgtaagctgaa ... cgttatgcagATTCAGAAGATGAAGATGAACATAAACATGAAGAATGAACAGAAAAACAAG
EST: TGTTAAACAAATCCAAGAAAAAGGAAAAGTTAGTGAAGATATCCGATCTG ATTCAGAAGATGAAGATGAACATAAACATGAAGAATGAACAGAAAAACAAG
genomic: TGTTAAACAAATCCAAGAAAAAGGAAAAGTTAGTGAAGATATCCGATCTGgtaagctgaa ... cgttatgcagATTCAGAAGATGAAGATGAACATAAACATGAAGAATGAACAGAAAAACAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCTTGCAAGTTCTTCATATATATTGGTGGGTTCTGATGCTTAGGATGCTTGTTAAACAAATCCAAGAAAAAGGAAAAGTTAGTGAAGATATCCGATCTGgtaagctgaatgatgcactaaatatatgcctttctaagatgaactttttatgcattatgtcagaaaatattaacttgatgctgatgatccctatccatgtagcctcgggttttgaagtggccttactcaatagaaattttaacttgttatctgattgtaatctgtttcacatcacattttcgttatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA