Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCCAAAGTATGCTTCGAAGTACCAAACTGCTGCAGAGAATGCTTTAAGCCATTGCTATCGTTCTTGCCTAGAACTTTTAATTGATCATGGGCTTAAAAGgttttgtttcagatgttataagttataacgttttcttgaaacagtttgttagggcatctcccatgcagccttaaagatctaaaacttgcttttttgttggcatatattgatcag

Basic information

species Glycine max
transcript GLYMA02G12670.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G12670.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv01s0011g00870.t01 (Vitis vinifera), 5'ss of exon 4
GCCCAAAGTATGCTTCGAAGTACCAAACTGCTGCAGAGAATGCTTTAAGCCATTGCTATCGTTCTTGCCTAGAACTTTTAATTGATCATGGGCTTAAAAGgtt--ttgtt-tcagatgttataagttataacgttttcttgaaacagtttgttag--ggcatctcccatgcagccttaaagatctaaaacttgcttttttgttggcatatattgat-cag
| || ||||||||    || || || |||||||||||||||||||| || || |||||||| |||||||| |||||| | || ||  |||| ||| | |||||  ||| | |||||||||| |     |    | || |  | |  |||  | |   |  | ||    |     ||||| || |   || ||  |||    ||| ||| | | ||| |||
GTCCCAAGTATGCAGTAAAATATCATACTGCTGCAGAGAATGCTTTGAGTCACTGCTATCGGTCTTGCCTTGAACTTCTTATAGAAAATGGCCTTCAGAGgttggttgctatcagatgttacattcatttctttcttgtatagattgttcatcacttgttacctttttttttttcttaatgaacgggaatttagttta--attgacatttttggatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|12773472|gb|BG238399.1|BG238399
EST:     CATTGCTATCGTTCTTGCCTAGAACTTTTAATTGATCATGGGCTTAAAAG                         CATTGCCATGGGATGTATNTATACTGAGGCAAAGAACTATCCCCGTGAGCC
genomic: CATTGCTATCGTTCTTGCCTAGAACTTTTAATTGATCATGGGCTTAAAAGgttttgtttc ... tattgatcagCATTGCCATGGGATGTATTTATACTGAGGCAAAGAACTATCCCCGTGAGCC