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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGGAACCTTCACTATGGATAAGAAGAAGCTACTTCAGCTAGTTGGGAAGGCTAACTCAAATTTGGCCGATGTGATTCTTAAAGTTGGTCTCTTTGAGAGgtattttatccttgttttagaaaaatacacatacggcagtgtaagaatatattgaaaatttaagattatagtaatccctaaagatttcaaatatttgatttatcaattcatttcatcctagactagtgagaaattttggttttttttttaattgtggattaatcag

Basic information

species Glycine max
transcript GLYMA02G12560.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G12560.1 (Glycine max), 5'ss of exon 5
lower sequence: AT1G69380.1 (Arabidopsis thaliana), 5'ss of exon 5
CTGGAACCTTCACTATGGATAAGAAGAAGCTACTTCAGCTAGTTGGGAAGGCTAACTCAAATTTGGCCGATGTGATTCTTAAAGTTGGTCTCTTTGAGAGgtattttatccttgttttagaaaaatacacatacggcagtgtaagaa---tatattgaaaatttaagattatagtaatccctaaagatttcaaatatttgatttatcaattcatttcatcctagactagtgagaaattttggttttttttttaattgtggattaatcag
| ||||| ||||| |||   | ||| |||||  | || || || |||||||| || || ||| | |||||||||||||| ||||||||| | ||||||||||||| ||    ||||  |  |   || |  |   |   | || ||    |||||  | |   | ||| |    |  || ||     | ||| |                                                                           
CCGGAACATTCACAATGACCAGGAAAAAGCTCTTCCAACTTGTAGGGAAGGCGAATTCTAATATAGCCGATGTGATTCTCAAAGTTGGTTTGTTTGAGAGgtattctactaatgttaaatcactttatat-tgttgttttctatgatctctatatatatatgctgagactcatatgttctcttgttttctcatag--------------------------------------------------------------------------

upper sequence: GLYMA02G12560.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv01s0010g00520.t01 (Vitis vinifera), 5'ss of exon 5
CTGGAACCTTCACTATGGATAAGAAGAAGCTACTTCAGCTAGTTGGGAAGGCTAACTCAAATTTGGCCGATGTGATTCTTAAAGTTGGTCTCTTTGAGAGgtattttatccttgttttagaaaaatacac-atacggcagtgtaagaatatattgaaaatttaagattatagtaatccctaaagatttcaaatatttgatttatcaattcatttcatcctagactagtgagaaattttggttttttttttaattgtggattaatcag
||||||| ||||| ||||||| || ||||||  | || || ||||| || || || |||||  | |||||||| ||||| |||||||| ||||||||||||||      |   | |||   |    | |    ||  || | |  |  ||| |       |  || | | |  | | |  |||  | |    | |||   ||||                                                               
CTGGAACTTTCACAATGGATAGGAGGAAGCTCTTCCAACTTGTTGGAAAAGCCAATTCAAACCTAGCCGATGTCATTCTCAAAGTTGGACTCTTTGAGAGgtaaaaccactaggatttctcatttcatattgcacttcaatatggggctatgtctc--tctgcaggtgaca--agtgcacaaatctcttttttttttttcttat---------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19052719|gb|BM731386.1|BM731386
EST:     GCTAACTCAAATTTGGCCGATGTGATTCTTAAAGTTGGTCTCTTTGAGAG                         ATCAGAAATTGCTTGGAGGGATGCAAAGTATGCTCAAATATATGAGTATCT
genomic: GCTAACTCAAATTTGGCCGATGTGATTCTTAAAGTTGGTCTCTTTGAGAGgtattttatc ... gattaatcagATCAGAAATTGCTTGGAGGGATGCAAAGTATGCTCAAATATATGAGTATCT
EST: gi|16344619|gb|BI970214.1|BI970214
EST:     GCTAACTCAAATTTGGCCGATGTGATTCTTAAAGTTGGTCTCTTTGAGAG                         ATCAGAAATTGCTTGGAGGGATGCAAAGTATGCTCAAATATATGAGTATCT
genomic: GCTAACTCAAATTTGGCCGATGTGATTCTTAAAGTTGGTCTCTTTGAGAGgtattttatc ... gattaatcagATCAGAAATTGCTTGGAGGGATGCAAAGTATGCTCAAATATATGAGTATCT
EST: gi|31458938|gb|CD400966.1|CD400966
EST:     GCTAACTCAAATTTGGCCGATGTGATTCTTAAAGTTGGTCTCTTTGAGAG                         ATCAGAAATTGCTTGGAGGGATGCAAAGTATGCTCAAATATATGAGTATCT
genomic: GCTAACTCAAATTTGGCCGATGTGATTCTTAAAGTTGGTCTCTTTGAGAGgtattttatc ... gattaatcagATCAGAAATTGCTTGGAGGGATGCAAAGTATGCTCAAATATATGAGTATCT