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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGAATAGTGGCTGTGTTGGAATGTGTGTCAATATGTGCAAGATTCCTACCCAAGATTTTTTCACTAATGAATTTGGACTTCCGTTAACAATGACTCCTAgtatgtcttcttgctattactagccaaaatttaaggtttacattcttgattacatatataacttcccaaaaaatattattggattattattattttttaatttaaaaaataattcagatcattttaaacttttattcacgtgtatctgaacttaatcatag

Basic information

species Glycine max
transcript GLYMA02G09680.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G09680.2 (Glycine max), 5'ss of exon 5
lower sequence: AT1G64680.1 (Arabidopsis thaliana), 5'ss of exon 2
GAGAATAGTGGCTGTGTTGGAATGTGTGTCAATATGTGCAAGATTCCTACCCAAGATTTTTTCACTAATGAATTTGGACTTCCGTTAACAATGACTCCTAgtatgtcttcttgctattactagccaaaatttaaggtttacattcttgattacatatataacttcccaaaaaatattattggattattattattttttaatttaaaaaataattcagatcattttaaacttttattcacgtgtatctgaacttaatcatag
||||| ||||| ||||| ||||||||||| ||||||||||||||||| ||||||||||| ||||| ||||| ||||| || ||  | || ||||  || |||||||    |  ||  |  |  |||   ||  |  ||    ||  || || |||     |  || | |      ||  | |                                                                               
GAGAACAGTGGGTGTGTAGGAATGTGTGTGAATATGTGCAAGATTCCAACCCAAGATTTCTTCACCAATGAGTTTGGCCTCCCACTCACCATGAACCCAAgtatgtaacatatctccttttgaccatccttatacattggtgtt--tgttttcattagccatctctccattttggtttgtag-------------------------------------------------------------------------------

upper sequence: GLYMA02G09680.2 (Glycine max), 5'ss of exon 5
lower sequence: Vv02s0025g02640.t01 (Vitis vinifera), 5'ss of exon 4
GAGAATAGTGGCTGTGTTGGAATGTGTGTCAATATGTGCAAGATTCCTACCCAAGATTTTTTCACTAATGAATTTGGACTTCCGTTAACAATGACTCCTAgtatg--tcttcttgctattactagccaaaatttaaggtttacattcttgattacatatataacttcccaaaaaatattattggattattattattttttaatttaaaaaataattcagatcattttaaacttttattcacgtgtatctgaacttaatcatag
||||| ||||| ||||| |||||||| || ||||||||||| |||||||| |||||||| ||||| || ||||| || ||||| ||||| ||||| || |||||   ||||||| |  | ||  | |   | |        ||| | |   ||     |  |||    | ||    |   |  |||||  ||    | || | ||      | ||   | |  || |   ||||| |||| |                     
GAGAACAGTGGGTGTGTGGGAATGTGCGTGAATATGTGCAAAATTCCTACTCAAGATTTCTTCACCAACGAATTCGGGCTTCCTTTAACTATGACCCCAAgtatacatcttcttccattcacatgtctttactgccaaca-acagtgtgatttctggctgcaacaatgctaatggcaacctgtgattaccatatcatattcagtttgtccttgat---gtttcttcttttcttttcttcatgcag------------------

upper sequence: GLYMA02G09680.2 (Glycine max), 5'ss of exon 5
lower sequence: PP1S6_190V6.1 (Physcomitrella patens), 5'ss of exon 5
GAGAATAGTGGCTGTGTTGGAATGTGTGTCAATATGTGCAAGATTCCTACCCAAGATTTTTTCACTAATGAATTTGGACTTCCGTTAACAATGACTCCTAgtatgtcttcttgctattactagccaaaatttaaggtttacattcttgattacatatataacttcccaaaaaatattattggatt-attattattttttaatttaaaaaataattcagatcattttaaacttttattcacgtgtatctgaacttaatcatag
|| |||||||| || || || ||||| |||||||||||||| || || ||||| ||||| ||||| |||||||| || |||||  | || ||||| || |||  ||   ||||   | || |||   | |||||         ||   |||   | | || || ||| |    || |  ||  || | | | | |  |   | | | ||  |    |  |     |  ||    || |   |   |        |       
GAAAATAGTGGATGCGTCGGGATGTGCGTCAATATGTGCAAAATCCCGACCCAGGATTTCTTCACCAATGAATTCGGTCTTCCACTTACTATGACACCCAgtgagtg--cttgacttcac-agcaggactttaaaacgctgggtc---attggttttttagctgccctattgttagttctgtgttgagtctgactgatccgtctcacaagaatgctatgtgtacgttgacgacaatcccaattctttactgtgcag------

upper sequence: GLYMA02G09680.2 (Glycine max), 5'ss of exon 5
lower sequence: EFJ25185 (Selaginella moellendorffii), 5'ss of exon 4
GAGAATAGTGGCTGTGTTGGAATGTGTGTCAATATGTGCAAGATTCCTACCCAAGATTTTTTCACTAATGAATTTGGACTTCCGTTAACAATGACTCCTAgtatgtcttcttgctattactagccaaaatttaaggtttacattcttgattacatatataacttcccaaaaaatattattggattattattattttttaatttaaaaaataattcagatcattttaaacttttattcacgtgtatctgaacttaatcatag
||||| ||   ||||| ||||||||| || ||| |||| || ||||| ||||||||||| ||||| ||||| |||||||| ||  | || ||||| || |||| |        ||| || |  | |  | | |      | | | |   |                                                                                                               
GAGAACAGCTCCTGTGCTGGAATGTGCGTAAATGTGTGTAAAATTCCCACCCAAGATTTATTCACAAATGACTTTGGACTGCCTCTGACCATGACACCGAgtaagagaagg-actaatattttcgatcactcagaaaaaaaaatttgtgtag-------------------------------------------------------------------------------------------------------------

upper sequence: GLYMA02G09680.2 (Glycine max), 5'ss of exon 5
lower sequence: EFJ25335 (Selaginella moellendorffii), 5'ss of exon 5
GAGAATAGTGGCTGTGTTGGAATGTGTGTCAATATGTGCAAGATTCCTACCCAAGATTTTTTCACTAATGAATTTGGACTTCCGTTAACAATGACTCCTAgtatgtcttc-ttgctattactagccaaaatttaaggtttacattcttgattacatatataacttcccaaaaaatattattggattattattattttttaatttaaaaaataattcagatcattttaaacttttattcacgtgtatctgaacttaatcatag
||||| ||    |||||||||||||| || |||||||| || ||||| ||||| ||||| ||||| ||||| |||||  | ||  | || ||||| || |||| |      ||| | ||  ||       ||| |   | ||   | | |     | | ||                                                                                                     
GAGAACAGCAATTGTGTTGGAATGTGCGTAAATATGTGTAAAATTCCCACCCAGGATTTCTTCACAAATGACTTTGGGTTGCCTCTCACCATGACACCAAgtacgagaagattgatgtttttatttcctctttga---tcac---cctcagcgtttttgtag----------------------------------------------------------------------------------------------------

upper sequence: GLYMA02G09680.2 (Glycine max), 5'ss of exon 5
lower sequence: EFJ23359 (Selaginella moellendorffii), 5'ss of exon 5
GAGAATAGTGGCTGTGTTGGAATGTGTGTCAATATGTGCAAGATTCCTACCCAAGATTTTTTCACTAATGAATTTGGACTTCCGTTAACAATGACTCCTAgtatgtcttc-ttgctattactagccaaaatttaaggtttacattcttgattacatatataacttcccaaaaaatattattggattattattattttttaatttaaaaaataattcagatcattttaaacttttattcacgtgtatctgaacttaatcatag
||||| ||   ||||||||||||||| || |||||||| || ||||| ||||| ||||| ||||| ||||| |||||  | ||  | || ||||| || |||| |      ||| | ||  ||       ||| |   | ||   | | |     | | ||                                                                                                     
GAGAACAGCAACTGTGTTGGAATGTGCGTAAATATGTGTAAAATTCCCACCCAGGATTTCTTCACAAATGACTTTGGGTTGCCTCTCACCATGACACCAAgtacgagaagattgatgtttttatttcctctttga---tcac---cctcagcgtttttgtag----------------------------------------------------------------------------------------------------

upper sequence: GLYMA02G09680.2 (Glycine max), 5'ss of exon 5
lower sequence: EFJ23185 (Selaginella moellendorffii), 5'ss of exon 4
GAGAATAGTGGCTGTGTTGGAATGTGTGTCAATATGTGCAAGATTCCTACCCAAGATTTTTTCACTAATGAATTTGGACTTCCGTTAACAATGACTCCTAgtatgtcttcttgctattactagccaaaatttaaggtttacattcttgattacatatataacttcccaaaaaatattattggattattattattttttaatttaaaaaataattcagatcattttaaacttttattcacgtgtatctgaacttaatcatag
||||| ||   ||||| ||||||||| || ||| |||| || ||||| ||||||||||| ||||| ||||| |||||||| ||  | || ||||| || |||| |    ||   | || |    |    || |    ||  | ||||  ||   | | ||                                                                                                     
GAGAACAGCTCCTGTGCTGGAATGTGCGTAAATGTGTGTAAAATTCCCACCCAAGATTTATTCACAAATGACTTTGGACTGCCTCTGACCATGACACCGAgtaagaggactgattttttcatttcttgtttgatcacttgaactctttttt---tgtgtag----------------------------------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13478196|gb|BG507770.1|BG507770
EST:     CCAAGATTTTTTCACTAATGAATTTGGACTTCCGTTAACAATGACTCCTA                         ATTTTGAAGACATGAGTTGTGATATGGTGTATGGCCAAGTCCCACCTACAT
genomic: CCAAGATTTTTTCACTAATGAATTTGGACTTCCGTTAACAATGACTCCTAgtatgtcttc ... ttaatcatagATTTTGAAGACATGAGTTGTGATATGGTGTATGGCCAAGTCCCACCTACAT
EST: gi|209718238|gb|BW677473.1|BW677473
EST:     CCAAGATTTTTTCACTAATGAATTTGGACTTCCGTTAACAATGACTCCTA                         ATTTTGAAGACATGAGTTGTGATATGGTGTATGGCCAAGTCCCACCTACAT
genomic: CCAAGATTTTTTCACTAATGAATTTGGACTTCCGTTAACAATGACTCCTAgtatgtcttc ... ttaatcatagATTTTGAAGACATGAGTTGTGATATGGTGTATGGCCAAGTCCCACCTACAT
EST: gi|51336380|gb|CO980246.1|CO980246
EST:     CCAAGATTTTTTCACTAATGAATTTGGACTTCCGTTAACAATGACTCCTA                         ATTTTGAAGACATGAGTTGTGATATGGTGTATGGCCAAGTCCCACCTACAT
genomic: CCAAGATTTTTTCACTAATGAATTTGGACTTCCGTTAACAATGACTCCTAgtatgtcttc ... ttaatcatagATTTTGAAGACATGAGTTGTGATATGGTGTATGGCCAAGTCCCACCTACAT