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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTACCCTCGTCTTTTGAATTTCAATCCTGTTGTCAGTCGAAGTTTTACCATGTCCTTAACAAGGGATTGCATATGTCCTATGGTGCTTACCCGTGGCAGgtattcccataatttgctcccctgtattttaaaacagactttgttaattgttaatacattacattttaaatccctgattttcttgaaagagacctcttttacttccccctttattctatttctaatgttttaatatgtttattgttttag

Basic information

species Glycine max
transcript GLYMA02G09080.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G09080.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os05g05260.1 (Oryza sativa), 5'ss of exon 4
TGTACCCTCGTCTTTTGAATTTCAATCCTGTTGTCAGTCGAAGTTTTACCATGTCCTTAACAAGGGATTGCATATGTCCTATGGTGCTTACCCGTGGCAGgtattcccataatttgctcccctgtattttaaaacagactttgttaattgttaatacattacattttaaatccctgattttcttgaaagagacctcttttacttccccctttattctatttctaatgttttaatatgtttattgttttag
| |||||||| |||||||| || ||||||||| | ||  | || || || ||||| ||||||||||||||||||||||| |||||  | ||  | || ||||||   |      | |     |  || |    | | | | | || |  |  |  |  | |  | |  | | | || |||   |   ||  |   | | ||                                                 
TCTACCCTCGCCTTTTGAACTTTAATCCTGTTATAAGCAGGAGCTTCACAATGTCTTTAACAAGGGATTGCATATGTCCCATGGTCTTGACAAGAGGAAGgtatggaccgggccttcaaaatttcatgt-ggcatatattattttgaaagcaagcaactaatttatccattgcatgttttaaatactagc-atagcatctat------------------------------------------------

upper sequence: GLYMA02G09080.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G097605_T01 (Zea mays), 5'ss of exon 4
TGTACCCTCGTCTTTTGAATTTCAATCCTGTTGTCAGTCGAAGTTTTACCATGTCCTTAACAAGGGATTGCATATGTCCTATGGTGCTTACCCGTGGCAGgtattcccataatttgctcccctgtattttaaaacagactttgttaattgttaatacattacattttaaatccctgattttcttgaaagagacctcttttacttccccctttattctatttctaatgttttaatatgtttattgttttag
| ||||||||||| |||||||| ||||||||  | ||  |||| || ||||||||||||||||| ||||| || ||||| |||||  | ||||| || ||||||       |  || ||||  |          |  ||||  | | ||   |||  | |  | | ||         || | || |    | |  ||| |  |   |  |  || |||                                
TTTACCCTCGTCTCTTGAATTTTAATCCTGTCATAAGCAGAAGCTTCACCATGTCCTTAACAAGAGATTGTATTTGTCCCATGGTCTTGACCCGAGGAAGgtat------gagctggtcccacg----------cgaacttcat-atttcaaaatctactgtactgtagcatgacacttatgttaagcatggca-cttatgttagtctttaaatgcta--------------------------------

upper sequence: GLYMA02G09080.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G008524_T01 (Zea mays), 5'ss of exon 1
TGTACCCTCGTCTTTTGAATTTCAATCCTGTTGTCAGTCGAAGTTTTACCATGTCCTTAACAAGGGATTGCATATGTCCTATGGTGCTTACCCGTGGCAGgtattcccataatttgctc---ccctgtattttaaaacagactttgttaattg-----ttaatacatta-cattttaaatccctgattttcttgaaagagacctcttttacttccccctttattctatttctaatgttttaatatgtttattgttttag
  ||||||||||| |||||||| ||||||||  | ||  |||| || || |||||||||||||| |||||||| || || |||||  | || || || ||||||   |        | |   |    ||||| ||||   ||| |     | |     || | |  ||| |||| | ||    |  ||   ||   | |                                                            
ATTACCCTCGTCTCTTGAATTTTAATCCTGTCATAAGCAGAAGGTTCACAATGTCCTTAACAAGAGATTGCATTTGCCCCATGGTCTTGACTCGAGGAAGgtatgagctggtcccacgcgaacttcatatttcaaaatctactgtagctgtcggagtctttaaatgttagcattgtcaacatatccttaggtttggaaat-----------------------------------------------------------

upper sequence: GLYMA02G09080.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv07s0104g00060.t01 (Vitis vinifera), 5'ss of exon 5
TGTACCCTCGTCTTTTGAATTTCAATCCTGTTGTCAGTCGAAGTTTTACCATGTCCTTAACAAGGGATTGCATATGTCCTATGGTGCTTACCCGTGGCAGgta-----ttcccataa--tttgctcccctgtattttaaaaca----gactttgttaattgttaatacattacattttaaatccctgattttc-ttgaaagagacctcttttactt--ccccctttattctatttctaatgttttaatatgtttattgttttag-----------------
| || ||||| ||| | ||||||||||| ||||||||||| |||||||| |||||||| |||||| | |||||||| || ||||| || || ||||| |||||     ||    |||  |||| | |  | |  | |  || |    |  | | ||| ||  || |||  ||||   |   |   | || ||  |||||||| |   |||  | |    |   ||||||   ||  |  |||||   | |  ||||||  ||                   
TCTATCCTCGCCTTCTTAATTTCAATCCAGTTGTCAGTCGGAGTTTTACAATGTCCTTGACAAGGAACTGCATATGCCCAATGGTTCTCACTCGTGGGAGgtaaggggttaaattaaggtttgattcttttttctattcaataatttgggtgtcttagtttctattac--tacaacctttcttattaatcttagttgaaagacattacttccattaggtcatttttatttatttatttttgtttctttctccttattgaattcaatttctttttatttcag