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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGATGAGCATGGGAGGGGGTGAGGGATTGGATTTTGATGCTGCAGGCAATGATGATGgtaactagatacaaattttgtccatgttatttatgggatgcagcacgatcaattgtttttttcatatatatttgttcaatccttttatgaacttgagtttaatttgctttagccgtagttgactttgactggtctcttgatctttttgttcag

Basic information

species Glycine max
transcript GLYMA02G08440.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254343607|gb|GR857363.1|GR857363
EST:     CATGGGAGGGGGTGAGGGATTGGATTTTGATGCTGCAGGCAATGATGATG                         ATGATGAGAGTGACACAGAAGAGGAGTTTGCAGCAGAAGCATCTGCTAGTA
genomic: CATGGGAGGGGGTGAGGGATTGGATTTTGATGCTGCAGGCAATGATGATGgtaactagat ... ttttgttcagATGATGAGAGTGACACAGAAGAGGAGTTTGCAGCAGAAGCATCTGCTAGTA
EST: gi|193326186|gb|FK291101.1|FK291101
EST:     TGAGGGATTTGGATTTTTGATGCTGCAGGCAATGATGATG                         ATGATGAGAGTGACACAGAAGAGGAGTTTGCAGCAGAAGCATCTGCTAGTA
genomic: TGAGGGA-TTGGA-TTTTGATGCTGCAGGCAATGATGATGgtaactagat ... ttttgttcagATGATGAGAGTGACACAGAAGAGGAGTTTGCAGCAGAAGCATCTGCTAGTA
EST: gi|8402677|gb|BE058311.1|BE058311
EST:     CATGGGAGGGGGTGAGGGATTGGATTNTGATGCTGCAGGCGATGATAATG                         ATGATGAGAGTGACACAGAA
genomic: CATGGGAGGGGGTGAGGGATTGGATTTTGATGCTGCAGGCAATGATGATGgtaactagat ... ttttgttcagATGATGAGAGTGACACAGAA
EST: gi|298162968|gb|HO011701.1|HO011701
EST:     CATGGGAGGGGGTGAGGGATTGGATTTTGATGCTGCAGGCAATGATGATG                         ATGATGAGAGTGACACAGAAGAGG
genomic: CATGGGAGGGGGTGAGGGATTGGATTTTGATGCTGCAGGCAATGATGATGgtaactagat ... ttttgttcagATGATGAGAGTGACACAGAAGAGG
EST: gi|192302805|gb|FG998487.1|FG998487
EST:     CATGGGAGGGGGTGAGGGATTGGATTTTGATGCTGCAGGCAATGATGATG                         ATGATGAGAGTGACACAGAAGAGGAGTTTGCAGCAGAAGCATCTGCTAGTA
genomic: CATGGGAGGGGGTGAGGGATTGGATTTTGATGCTGCAGGCAATGATGATGgtaactagat ... ttttgttcagATGATGAGAGTGACACAGAAGAGGAGTTTGCAGCAGAAGCATCTGCTAGTA
EST: gi|9985951|gb|BE659957.1|BE659957
EST:     CATGGGAGGGGGTGAGGGATTGGATTTTGATGCTGCAGGCAATGATGATG                         ATGATGAGAGTGACACAGAAGAGGAGTTTGCAGCAGAAGCATCTGCTAGTA
genomic: CATGGGAGGGGGTGAGGGATTGGATTTTGATGCTGCAGGCAATGATGATGgtaactagat ... ttttgttcagATGATGAGAGTGACACAGAAGAGGAGTTTGCAGCAGAAGCATCTGCTAGTA
EST: gi|193599852|gb|FK551591.1|FK551591
EST:     CATGGGAGGGGGTGAGGGATTGGATTTTGATGCTGCAGGCAATGATGATG                         ATGATGAGAGTGACACAGAAGAGGAGTTTGCAGCAGAAGCATCTGCTAGTA
genomic: CATGGGAGGGGGTGAGGGATTGGATTTTGATGCTGCAGGCAATGATGATGgtaactagat ... ttttgttcagATGATGAGAGTGACACAGAAGAGGAGTTTGCAGCAGAAGCATCTGCTAGTA
EST: gi|298172800|gb|HO020354.1|HO020354
EST:     CATGGGAGGGGGTGAGGGATTGGATTTTGATGCTGCAGGCAATGATGATG                         ATGATGAGAGTGACACAGA
genomic: CATGGGAGGGGGTGAGGGATTGGATTTTGATGCTGCAGGCAATGATGATGgtaactagat ... ttttgttcagATGATGAGAGTGACACAGA
EST: gi|151400315|gb|EV270129.1|EV270129
EST:     GGATTTTGATGCTGCAGGCAATGATGATG                         ATGATGAGAGTGACACAGAAGAGGAGTTTGCAGCAGAAGCATCTGCTAGTA
genomic: GGATTTTGATGCTGCAGGCAATGATGATGgtaactagat ... ttttgttcagATGATGAGAGTGACACAGAAGAGGAGTTTGCAGCAGAAGCATCTGCTAGTA
EST: gi|192302804|gb|FG998486.1|FG998486
EST:     CATGGGAGGGGGTGAGGGATTGGATTTTGATGCTGCAGGCAATGATGATG                         ATGATGAGAGTGACACAGAAGAGGAGTTTGCAGCAGAAGCATCTGCTAGTA
genomic: CATGGGAGGGGGTGAGGGATTGGATTTTGATGCTGCAGGCAATGATGATGgtaactagat ... ttttgttcagATGATGAGAGTGACACAGAAGAGGAGTTTGCAGCAGAAGCATCTGCTAGTA
EST: gi|24205344|gb|BU964597.1|BU964597
EST:     CATGGGAGGGGGTGAGGGATTGGATTTTGATGCTGCAGGCAATGATGATG                         ATGATGAGAGTGACACAGAAGAGGAGTTTGCAGCAGAAGCATCTGCTAGTA
genomic: CATGGGAGGGGGTGAGGGATTGGATTTTGATGCTGCAGGCAATGATGATGgtaactagat ... ttttgttcagATGATGAGAGTGACACAGAAGAGGAGTTTGCAGCAGAAGCATCTGCTAGTA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAGATGAGCATGGGAGGGGGTGAGGGATTGGATTTTGATGCTGCAGGCAATGATGATGgtaactagatacaaattttgtccatgttatttatgggatgcagcacgatcaattgtttttttcatatatatttgttcaatccttttatgaacttgagtttaatttgctttagccgtagttgactttgactggtctcttgatctttttgttcag

- - - - - - - - - - - - - - - - - -  ATGCTG
- - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - CTGCAG