Skip to another splice site:
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 5'  3'   		2  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCAATTGGATTATGGGGATAACATATGTGGTGCAGTACTAAGCATTCGTTTCAACGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCAGACCATCAGgttggcattattatggaccctatttgtatatgcatatgtaaattatgcatgtcctcagtattgttgctttttttcttttatagaagcatccttagtattgttcctgctttctcattacag

Basic information

species Glycine max
transcript GLYMA02G08010.3
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G08010.3 (Glycine max), 5'ss of exon 5
lower sequence: AT5G18110.1 (Arabidopsis thaliana), 5'ss of exon 5
CCAATTGGATTATGGGGATAACATATGTGGTGCAGTACTAAGCATTCGTTTCAACGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCAGACCATCAGgttggca--ttattatggaccctatttgtatatgcatatgtaaattatgcatgtcctcagtattgttgctttttttcttttatagaagcatccttagtattgttcctgctttctcattacag
|||  | ||| |||  |||||||||||||| |||||||| ||  | |||||||||||||| ||  | ||||| ||||||||||||||||| |||||||||||  | |   | ||    |    |  ||| | |     | |   ||      || || |  |  || ||  | |||   ||| | |                                    
CCAGCTTGATGATGCTGATAACATATGTGGGGCAGTACTGAGTGTCCGTTTCAACGAGGACATCATTAGTGTATGGAATCGCAATGCTTCTGACCATCAGgtgagaaaactgttcacaagaagaactgtctctctccctctccttttgattggtactta-cacagt-gcaatgttttccttaaacag-----------------------------------

upper sequence: GLYMA02G08010.3 (Glycine max), 5'ss of exon 5
lower sequence: Vv08s0007g07290.t01 (Vitis vinifera), 5'ss of exon 5
CCAATTGGATTATGGGGATAACATATGTGGTGCAGTACTAAGCATTCGTTTCAACGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCAGACCATCAGgttggcattattatggaccctatttgtatatgcatatgtaaattatgcatgtcctcagtattgttgcttt--ttttcttttatagaagcatccttagtattgttcctgctttctcattacag
|||| | |||||||| ||||||||||||||||| |||||||||||||||||||| || |||||||||||||| |||||||||||||| || || ||||||||  | |  |  |   |  | | |  |||    |||| |    | ||  |||   || ||||||  | ||  ||| |||| |   |                                    
CCAACTTGATTATGGTGATAACATATGTGGTGCTGTACTAAGCATTCGTTTCAATGAAGATATATTGAGTGTGTGGAATCGCAATGCATCCGATCATCAGgtcagta--accactaattc-actactattctgatatttt--ctgtgtttgtgtacaatattgtgaccttgatttactttcaattag-----------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207740542|gb|GD713808.1|GD713808
EST:     TCAACGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCAGACCATCAG                         GCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCTCAC
genomic: TCAACGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCAGACCATCAGgttggcatta ... ctcattacagGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCTCAC
EST: gi|193318318|gb|FK285840.1|FK285840
EST:     TCAACGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCAGACCATCAG                         GCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCTCAC
genomic: TCAACGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCAGACCATCAGgttggcatta ... ctcattacagGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCTCAC
EST: gi|254324094|gb|GR840519.1|GR840519
EST:     TCAACGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCAGACCATCAG                         GCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCTCAC
genomic: TCAACGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCAGACCATCAGgttggcatta ... ctcattacagGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCTCAC
EST: gi|18039755|gb|BM308049.1|BM308049
EST:     TCAACGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCAGACCATCAG                         GCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCTCAC
genomic: TCAACGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCAGACCATCAGgttggcatta ... ctcattacagGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCTCAC
EST: gi|254326145|gb|GR840737.1|GR840737
EST:     TCAACGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCAGACCATCAG                         GCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCTCAC
genomic: TCAACGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCAGACCATCAGgttggcatta ... ctcattacagGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCTCAC
EST: gi|208034484|gb|GD837180.1|GD837180
EST:     TCAACGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCAGACCATCAG                         GCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCTCAC
genomic: TCAACGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCAGACCATCAGgttggcatta ... ctcattacagGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCTCAC
EST: gi|193412542|gb|FK377773.1|FK377773
EST:     TCAACGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCAGACCATCAG                         GCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCTCAC
genomic: TCAACGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCAGACCATCAGgttggcatta ... ctcattacagGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCTCAC
EST: gi|193385011|gb|FK351493.1|FK351493
EST:     TCAACGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCAGACCGTCAG                         GCTGTAATGGCTC
genomic: TCAACGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCAGACCATCAGgttggcatta ... ctcattacagGCTGTAATGGCTC
EST: gi|208059940|gb|GD857424.1|GD857424
EST:     TATTGAGTGTCTGGAATCGCAATGCTTCAGACCATCAG                         GCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCTCAC
genomic: TATTGAGTGTCTGGAATCGCAATGCTTCAGACCATCAGgttggcatta ... ctcattacagGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCTCAC
EST: gi|8284610|gb|BE022169.1|BE022169
EST:     TCAACGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCAGACCATCAG                         GCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCTCAC
genomic: TCAACGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCAGACCATCAGgttggcatta ... ctcattacagGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCTCAC
EST: gi|120531526|gb|EH259659.1|EH259659
EST:     TCAACGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCAGACCATCAG                         GCTGTAATGGCTTTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCTCAC
genomic: TCAACGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCAGACCATCAGgttggcatta ... ctcattacagGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCTCAC
EST: gi|207826308|gb|GD799433.1|GD799433
EST:     GAGTGTCTGGAATCGCAATGCTTCAGACCATCAG                         GCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCTCAC
genomic: GAGTGTCTGGAATCGCAATGCTTCAGACCATCAGgttggcatta ... ctcattacagGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCTCAC
EST: gi|254324773|gb|GR834198.1|GR834198
EST:     TCAACGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCAGACCATCAG                         GCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCTCAC
genomic: TCAACGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCAGACCATCAGgttggcatta ... ctcattacagGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCTCAC
EST: gi|120496098|gb|EH224265.1|EH224265
EST:     TCAACGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCAGACCATCAG                         GCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCTCAC
genomic: TCAACGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCAGACCATCAGgttggcatta ... ctcattacagGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCTCAC
EST: gi|298163689|gb|HO012422.1|HO012422
EST:     TCAACGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCAGACCATCAG                         GCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCTCAC
genomic: TCAACGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCAGACCATCAGgttggcatta ... ctcattacagGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCTCAC
EST: gi|19452727|gb|BM954137.1|BM954137
EST:     TCAACGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCAGACCATCAG                         GCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCTCAC
genomic: TCAACGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCAGACCATCAGgttggcatta ... ctcattacagGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCTCAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCAATTGGATTATGGGGATAACATATGTGGTGCAGTACTAAGCATTCGTTTCAACGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCAGACCATCAGgttggcattattatggaccctatttgtatatgcatatgtaaattatgcatgtcctcagtattgttgctttttttcttttatagaagcatccttagtattgttcctgctttctcattacag

- - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAT