1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CCAATTGGATTATGGGGATAACATATGTGGTGCAGTACTAAGCATTCGTTTCAACGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCAGACCATCAGgttggcattattatggaccctatttgtatatgcatatgtaaattatgcatgtcctcagtattgttgctttttttcttttatagaagcatccttagtattgttcctgctttctcattacag
species | Glycine max |
transcript | GLYMA02G08010.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TCAACGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCAGACCATCAG GCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCTCACEST: gi|193318318|gb|FK285840.1|FK285840
genomic: TCAACGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCAGACCATCAGgttggcatta ... ctcattacagGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCTCAC
EST: TCAACGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCAGACCATCAG GCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCTCACEST: gi|17401526|gb|BM178308.1|BM178308
genomic: TCAACGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCAGACCATCAGgttggcatta ... ctcattacagGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCTCAC
EST: TCAACGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCAGACCATCAG GCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCTCACEST: gi|151403487|gb|EV273297.1|EV273297
genomic: TCAACGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCAGACCATCAGgttggcatta ... ctcattacagGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCTCAC
EST: TCAACGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCAGACCATCAG GCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCTCACEST: gi|17023729|gb|BM094763.1|BM094763
genomic: TCAACGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCAGACCATCAGgttggcatta ... ctcattacagGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCTCAC
EST: TCAACGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCAGACCATCAG GCTGTAATGGCTCTGAGAGATTCAATCAAACGTCEST: gi|254324094|gb|GR840519.1|GR840519
genomic: TCAACGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCAGACCATCAGgttggcatta ... ctcattacagGCTGTAATGGCTCTGAGAGATTCAATCAAACGTC
EST: TCAACGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCAGACCATCAG GCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCTCACEST: gi|18039755|gb|BM308049.1|BM308049
genomic: TCAACGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCAGACCATCAGgttggcatta ... ctcattacagGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCTCAC
EST: TCAACGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCAGACCATCAG GCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCTCACEST: gi|254326145|gb|GR840737.1|GR840737
genomic: TCAACGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCAGACCATCAGgttggcatta ... ctcattacagGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCTCAC
EST: TCAACGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCAGACCATCAG GCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCTCACEST: gi|208034484|gb|GD837180.1|GD837180
genomic: TCAACGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCAGACCATCAGgttggcatta ... ctcattacagGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCTCAC
EST: TCAACGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCAGACCATCAG GCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCTCACEST: gi|120495839|gb|EH224006.1|EH224006
genomic: TCAACGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCAGACCATCAGgttggcatta ... ctcattacagGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCTCAC
EST: TCAACGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCAGACCATCAG GCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCTCACEST: gi|192316836|gb|FK006077.1|FK006077
genomic: TCAACGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCAGACCATCAGgttggcatta ... ctcattacagGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCTCAC
EST: TCAACGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCAGACCATCAC GCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCTCACEST: gi|193412542|gb|FK377773.1|FK377773
genomic: TCAACGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCAGACCATCAGgttggcatta ... ctcattacagGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCTCAC
EST: TCAACGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCAGACCATCAG GCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCTCACEST: gi|193385011|gb|FK351493.1|FK351493
genomic: TCAACGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCAGACCATCAGgttggcatta ... ctcattacagGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCTCAC
EST: TCAACGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCAGACCGTCAG GCTGTAATGGCTCEST: gi|208059940|gb|GD857424.1|GD857424
genomic: TCAACGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCAGACCATCAGgttggcatta ... ctcattacagGCTGTAATGGCTC
EST: TATTGAGTGTCTGGAATCGCAATGCTTCAGACCATCAG GCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCTCACEST: gi|120531368|gb|EH259501.1|EH259501
genomic: TATTGAGTGTCTGGAATCGCAATGCTTCAGACCATCAGgttggcatta ... ctcattacagGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCTCAC
EST: TCAACGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCAGACCATCAG GCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCTCACEST: gi|8284610|gb|BE022169.1|BE022169
genomic: TCAACGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCAGACCATCAGgttggcatta ... ctcattacagGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCTCAC
EST: TCAACGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCAGACCATCAG GCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCTCACEST: gi|120531526|gb|EH259659.1|EH259659
genomic: TCAACGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCAGACCATCAGgttggcatta ... ctcattacagGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCTCAC
EST: TCAACGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCAGACCATCAG GCTGTAATGGCTTTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCTCACEST: gi|120496028|gb|EH224195.1|EH224195
genomic: TCAACGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCAGACCATCAGgttggcatta ... ctcattacagGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCTCAC
EST: TCAACGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCAGACCATCAG GCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCTCACEST: gi|207826308|gb|GD799433.1|GD799433
genomic: TCAACGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCAGACCATCAGgttggcatta ... ctcattacagGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCTCAC
EST: GAGTGTCTGGAATCGCAATGCTTCAGACCATCAG GCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCTCACEST: gi|254324772|gb|GR834197.1|GR834197
genomic: GAGTGTCTGGAATCGCAATGCTTCAGACCATCAGgttggcatta ... ctcattacagGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCTCAC
EST: TCAACGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCAGACCATCAG GCTGTAATGGCTCTGAGAGATTCAATCAAAACGTCACTTAAAGCTTCCTCAEST: gi|213588418|gb|DB959738.1|DB959738
genomic: TCAACGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCAGACCATCAGgttggcatta ... ctcattacagGCTGTAATGGCTCTGAGAGATTCAATCAAA-CGTCACTTAAAGCTTCCTCA
EST: TCAACGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCAGACCATCAG GCTGTAATGGCTCTGAGEST: gi|11687361|gb|BF595037.1|BF595037
genomic: TCAACGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCAGACCATCAGgttggcatta ... ctcattacagGCTGTAATGGCTCTGAG
EST: TCAACGAAGATATATTGAGTGTCTGGAATCGCAATGCTTCAGACCATCAG GCTGNTA-TGGCTCTGAGAEST: gi|254324773|gb|GR834198.1|GR834198
genomic: TCAACGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCAGACCATCAGgttggcatta ... ctcattacagGCTG-TAATGGCTCTGAGA
EST: TCAACGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCAGACCATCAG GCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCTCACEST: gi|192323024|gb|FK016755.1|FK016755
genomic: TCAACGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCAGACCATCAGgttggcatta ... ctcattacagGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCTCAC
EST: TCAACGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCAGACCATCAG GCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCTCACEST: gi|254324093|gb|GR840518.1|GR840518
genomic: TCAACGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCAGACCATCAGgttggcatta ... ctcattacagGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCTCAC
EST: TCAACGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCAGACCATCAC GCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCTCACEST: gi|6341462|gb|AW164286.1|AW164286
genomic: TCAACGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCAGACCATCAGgttggcatta ... ctcattacagGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCTCAC
EST: TCAACGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCAGACCATCAA GCTGTAATGGCTCTGAGAGATTCAATCATACGTCACTTAAAGCTTCCTCACEST: gi|120496098|gb|EH224265.1|EH224265
genomic: TCAACGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCAGACCATCAGgttggcatta ... ctcattacagGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCTCAC
EST: TCAACGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCAGACCATCAG GCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCTCACEST: gi|6482757|gb|AW201979.1|AW201979
genomic: TCAACGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCAGACCATCAGgttggcatta ... ctcattacagGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCTCAC
EST: -CAACGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCAGACCATCAG GCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCTCACEST: gi|298163689|gb|HO012422.1|HO012422
genomic: TCAACGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCAGACCATCAGgttggcatta ... ctcattacagGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCTCAC
EST: TCAACGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCAGACCATCAG GCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCTCACEST: gi|19452727|gb|BM954137.1|BM954137
genomic: TCAACGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCAGACCATCAGgttggcatta ... ctcattacagGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCTCAC
EST: TCAACGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCAGACCATCAG GCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCTCACEST: gi|151410799|gb|EV280614.1|EV280614
genomic: TCAACGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCAGACCATCAGgttggcatta ... ctcattacagGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCTCAC
EST: TCAACGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCAGACCATCAG GCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCTCAC
genomic: TCAACGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCAGACCATCAGgttggcatta ... ctcattacagGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCTCAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCAATTGGATTATGGGGATAACATATGTGGTGCAGTACTAAGCATTCGTTTCAACGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCAGACCATCAGgttggcattattatggaccctatttgtatatgcatatgtaaattatgcatgtcctcagtattgttgctttttttcttttatagaagcatccttagtattgttcctgctttctcattacag
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