Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTATGGCATGGATTCTAGATGAGTATTCCAAATTTCATGGCCACTCTCCAGCAGTAGTGACTGGGAAACCTATAgtacgtagattaaactgtttgtatttctcattttaatgagcattgaactgtgccacaacagcaacttatcaacacactctttctacgattggattattag...

Basic information

species Glycine max
transcript GLYMA02G07940.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G07940.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv08s0007g07400.t01 (Vitis vinifera), 5'ss of exon 6
ACTATGGCATGGATTCTAGATGAGTATTCCAAATTTCATGGCCACTCTCCAGCAGTAGTGACTGGGAAACCTATAgtacgtagattaaactgtttgtatttctcattttaatgagcattgaactgtgccacaacagcaa---------cttatcaacacactctttctacgattggattattag
|| ||||||||||| ||||||||||| || |||||||||||| |||| || || || |||||||| || ||||| ||  ||| ||   ||| ||   ||        || |  || |  |   | | ||| ||  | |          | | |  |   |   ||     ||||  | ||    
ACCATGGCATGGATACTAGATGAGTACTCGAAATTTCATGGCTACTCACCTGCTGTGGTGACTGGAAAGCCTATTgtgagtatatagcactcttatgat-----gggttgaaaagtacaggtttataccataattgtaggtttgatttcctgtagatgtaaatttctgctgattcaagta----

upper sequence: GLYMA02G07940.1 (Glycine max), 5'ss of exon 5
lower sequence: EFJ06181 (Selaginella moellendorffii), 5'ss of exon 4
ACTATGGCATGGATTCTAGATGAGTATTCCAAATTTCATGGCCACTCTCCAGCAGTAGTGACTGGGAAACCTATAgtacgtagattaaactgtttgtatttctcattttaatgagcattgaactgtgccacaacagcaacttatcaacacactctttctacgattggattattag
|| ||||| |||||||| |||||||| ||||| ||||||||  |||||||||||||||| ||||| || ||  | |||        |   |||||   ||| | ||  | ||  |  |||  || ||  |         ||| |||                             
ACCATGGCTTGGATTCTGGATGAGTACTCCAAGTTTCATGGGTACTCTCCAGCAGTAGTCACTGGAAAGCCACTTgta--------agcttgttt---ttttttatgatcatttgatttgtcctctgatattgtttttgcttctcag----------------------------

upper sequence: GLYMA02G07940.1 (Glycine max), 5'ss of exon 5
lower sequence: EFJ36430 (Selaginella moellendorffii), 5'ss of exon 4
ACTATGGCATGGATTCTAGATGAGTATTCCAAATTTCATGGCCACTCTCCAGCAGTAGTGACTGGGAAACCTATAgtacgtagattaaactgtttgtatttctcattttaatgagcattgaactgtgccacaacagcaacttatcaacacactctttctacgattggattattag
|| ||||| |||||||| |||||||| ||||| ||||||||  |||||||||||||||| ||||| || ||  | |||        |   ||||| | ||||| |||   ||  |  |||  || ||  |         ||| |||                             
ACCATGGCTTGGATTCTGGATGAGTACTCCAAGTTTCATGGGTACTCTCCAGCAGTAGTCACTGGAAAGCCACTTgta--------agcttgtttttctttctgatt---atttgatttgtcctctgatattgtttttgcttctcag----------------------------