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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCACTTCTTGCAGCGCTGGGATCTGTTCAGTTTGTATCTAACATTGCCTTCGCTTACTTTGTCTTGAACAAAATGGTGACAGTCAAgtatgctaaatttgaactgagattaccgtttcatttttgtttgttttcacaactctgttctagctgtaattcttgtagcttaattgatggcatttgatcag

Basic information

species Glycine max
transcript GLYMA02G07510.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G07510.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os02g31874.1 (Oryza sativa), 5'ss of exon 5
TCACTTCTTGCAGCGCTGGGATCTGTTCAGTTTGTATCTAACATTGCCTTCGCTTACTTTGTCTTGAACAAAATGGTGACAGTCAAgtatgctaaatttgaactgagattaccgtttcatttttgtttgttttcacaactctgttctagctgtaattcttgtagcttaattgatggcatttgatcag--------
|||||||||||||| || |||||  |||| ||||| || || ||||| || ||||||||||| |||||||| |   |  |||| ||||||||    ||  |  |      |   ||| ||    |       |  |||   |    ||  || ||||    ||| || ||  |  |  |||  || |        
TCACTTCTTGCAGCTCTTGGATCGATTCAATTTGTGTCCAATATTGCATTTGCTTACTTTGTGTTGAACAAGACCATTTCAGTGAAgtatgcattgttctactttttggaatttttttataaaggaaatgagttccaaacttccaatacttggaatt---atagatttatgaa--gtttttactctgcttttcag

upper sequence: GLYMA02G07510.1 (Glycine max), 5'ss of exon 5
lower sequence: AT3G26670.3 (Arabidopsis thaliana), 5'ss of exon 5
TCACTTCTTGCAGCGCTGGGATCTGTTCAGTTTGTATCTAACATTGCCTTCGCTTACTTTGTCTTGAACAAAATGGTGACAGTCAAgtatgctaaat-ttgaactgagattaccgtttcatttttgtttgttttcacaactctgttctagctgtaattcttgta-gcttaattgatggcatttgatcag
|| ||||| ||||| || |||||  |||| |||||||| ||||| || || |||||  |||| |||||||||||||| || ||||||||||| || |      |||  ||            ||      ||   |   ||||| |||     ||  | | ||| || |   | |  |           
TCCCTTCTAGCAGCTCTTGGATCCATTCAATTTGTATCCAACATAGCATTTGCTTATGTTGTATTGAACAAAATGGTTACTGTCAAgtatgcaaactacctcgctgcaatctttaacatgcattaccgatttactaagtctctgctcttctaatatctttagtatgccttggtcacag-----------

upper sequence: GLYMA02G07510.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv14s0068g00780.t01 (Vitis vinifera), 5'ss of exon 5
TCACTTCTTGCAGCGCTGGGATCTGTTCAGTTTGTATCTAACATTGCCTTCGCTTACTTTGTCTTGAACAAAATGGTGACAGTCAAgtatgct-aaatttgaactgagattaccgtttcatttttgtttgttttcacaactctgtt-ctagctgtaattcttgt--agcttaattgatggcatttgatcag
|||||||||||||| ||||||||  |||| || || || |||||||| || || ||||| || ||||||||||||||| | |||||||||| | |||| |||| |||| ||    |   |  ||||    | || | |  |   || | |  | || | ||     |  || |   || || | |  ||||
TCACTTCTTGCAGCCCTGGGATCAATTCAATTCGTTTCCAACATTGCATTTGCCTACTTCGTTTTGAACAAAATGGTGTCTGTCAAgtatgttcaaatctgaagtgagcttgatttccgaactttgacactgttaatattttgatttccatgtatactgctaagtaaatttgaaatattgcttcttttcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192297759|gb|FG989965.1|FG989965
EST:     TCTAACATTGCCTTCGCTTACTTTGTCTTGAACAAAATGGTGACAGTCAA                         GGTACTGGTTGCCACAGCTTTCATTGTTCTTGGGAATGTTTTTTCTAGTTG
genomic: TCTAACATTGCCTTCGCTTACTTTGTCTTGAACAAAATGGTGACAGTCAAgtatgctaaa ... atttgatcagGGTACTGGTTGCCACAGCTTTCATTGTTCTTGGGAATGTTTTT-CTAGTTG