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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAGATTGGCCATGGAAGATTTTTGAGTTGCATGGGAGGTTATTGGCATCCAGAATGCTTTTGTTGCCATGCTTGCAAACTTCCAATCACTGATTATGAGgttagagtcttgtgttgattgctacatgcttcatgaaactcaattttataacatgttttaaacattcttctggaatttataaatgaagatctttaacttccttttccttaattttttgaggtcaatatgattgtatataatgcttaaatccatattcattcacag

Basic information

species Glycine max
transcript GLYMA02G06720.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G06720.2 (Glycine max), 5'ss of exon 5
lower sequence: Vv04s0023g01030.t01 (Vitis vinifera), 5'ss of exon 6
TGAGATTGGCCATGGAAGATTTTTGAGTTGCATGGGAGGTTATTGGCATCCAGAATGCTTTTGTTGCCATGCTTGCAAACTTCCAATCACTGATTATGAGgttagagtcttgtgttgattgctacatgcttcatgaaactcaattttataacatgttttaaacattcttctggaatttataaatgaagatctttaacttccttttccttaattttttgaggtcaatatgattgtatataatgcttaaatccatattcattcacag
 |||||||| |||||||||| ||||||||||||||| | |  ||||||||||||||| ||| |||||| ||||||    ||||| ||   |||  |||||||   | ||  ||   ||||     || ||     |   |   | |   |     |  | || || |||   | ||  | |  |||     |||  |     |||   |  || | ||   |  |  || |  | |  | |  ||         ||| || | ||
CGAGATTGGTCATGGAAGATATTTGAGTTGCATGGGTGCTGTTTGGCATCCAGAATGTTTTCGTTGCCGTGCTTGTGGGCTTCCCATTTTTGAACATGAGgtccaaatccagttcagatt----tattct-----agttttggtctggcattggctaatgaa-atgctt---ggatccaaagctga-----ttttccagtaattttggtggttctatggaatgcacttgctaattttcattttttc------ctttctttgatag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17153345|gb|BM143278.1|BM143278
EST:     CAGAATGCTTTTGTTGCCATGCTTGCAAACTTCCAATCACTGATTATGAG                         TTTTCTATGTCTGGAAATCGTCGTTATCATAAATCCTGCTATAAGGAGTTG
genomic: CAGAATGCTTTTGTTGCCATGCTTGCAAACTTCCAATCACTGATTATGAGgttagagtct ... tcattcacagTTTTCTATGTCTGGAAATCGTCGTTATCATAAATCCTGCTATAAGGAGTTG