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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCTCTGATTTTGGATTGGCTAAGTTGACCAATGATACTAATACACATGTCTCAACTCGTGTCATGGGAACATTCGGgtaatttcggcaccccatggtttaatacttctagaaactataaagaaagtgataaaaatggggattaatagtttaattttgcatgttgaaacag

Basic information

species Glycine max
transcript GLYMA02G06430.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G06430.1 (Glycine max), 5'ss of exon 5
lower sequence: AT2G18470.1 (Arabidopsis thaliana), 5'ss of exon 6
GTCTCTGATTTTGGATTGGCTAAGTTGACCAATGATACTAATACACATGTCTCAACTCGTGTCATGGGAACATTCGGgtaatttcggcaccccatggtttaatacttctagaaactataaagaaagtgataaaaatggggattaatagtttaattttgcatgttgaaacag----
||  ||||||||||||| |||||||| ||   |||||  || || ||||| || |||||||| |||||||| |||||||||       |||  ||| |   ||  |||  || |||  ||  ||  | |      | |       || |||  || |        | |       
GTGGCTGATTTTGGATTAGCTAAGTTAACATCTGATAACAACACTCATGTATCTACTCGTGTGATGGGAACTTTCGGgtaagcgttttaccgtatgataagattgttcgtgacact-caagaaacataacctttgtagactaatctactttgcttctttccacaaacatgtgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192303171|gb|FG997747.1|FG997747
EST:     GTGTCATGGGAACATTCGG                         GTATCTGGCCCCAGAATACGCATCAAGTGGAAAATTGACAGAGAAATCTGA
genomic: GTGTCATGGGAACATTCGGgtaatttcgg ... gttgaaacagGTATCTGGCCCCAGAATACGCATCAAGTGGAAAATTGACAGAGAAATCTGA