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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTGAACCGCATGTTCATCATCAATGCAGGTTCTGGATTCAGAATGTTGTGGAATACCGTTAAGTCATTCCTTGACCCAAAGACCACATCAAAAATCCATgtgagaacaaagacattttcttataatatctacctgtttttgtcaataaattaagattttatctaattgagcttataatttaacag

Basic information

species Glycine max
transcript GLYMA02G05980.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G05980.1 (Glycine max), 5'ss of exon 5
lower sequence: AT2G18180.1 (Arabidopsis thaliana), 5'ss of exon 6
CTTGAACCGCATGTTCATCATCAATGCAGGTTCTGGATTCAGAATGTTGTGGAATACCGTTAAGTCATTCCTTGACCCAAAGACCACATCAAAAATCCATgtgagaacaaagacattttcttataatatctacctgtttttgtcaataaattaagattttatctaattgagcttataatttaacag
||||||| | ||||| ||||||||||| || || |||||||| ||||||||||| || |||||||| ||||||||||||||||| ||| |||| |||||||  || | | | ||   || |||| |    |  ||| | |     | | ||     |  ||  ||  | |  | ||| || |    
CTTGAACAGGATGTTTATCATCAATGCTGGCTCAGGATTCAGGATGTTGTGGAACACGGTTAAGTCTTTCCTTGACCCAAAGACTACAGCAAAGATCCATgcaagtatacaaac-cctttttatcactcttgactgatataaatgagagatattcttactacttagctaatttgata-ttcag---

upper sequence: GLYMA02G05980.1 (Glycine max), 5'ss of exon 5
lower sequence: AT4G36490.1 (Arabidopsis thaliana), 5'ss of exon 5
CTTGAACCGCATGTTCATCATCAATGCAGGTTCTGGATTCAGAATGTTGTGGAATACCGTTAAGTCATTCCTTGACCCAAAGACCACATCAAAAATCCATgtgagaaca-aagacattttcttataatatctacctgtttttgtcaataaatta--agattttatctaattgagcttataatttaacag---
||||||| | ||||| ||||||||||| || || |||||||||||||||||||| || |||||||| ||||||||||| ||||| ||| ||||||||||||  || |   || || ||||  |||   |||| | | |   ||  ||| | ||   | | ||||  |||||   ||| |  || || |    
CTTGAACAGGATGTTTATCATCAATGCTGGCTCAGGATTCAGAATGTTGTGGAACACGGTTAAGTCCTTCCTTGACCCGAAGACTACAGCAAAAATCCATgcaagtattcaaaaccttttactattgaatcttcttctgaatgataattagttttcacaatttaagtaattatactt-tgtttgaataccag

upper sequence: GLYMA02G05980.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv04s0023g02400.t01 (Vitis vinifera), 5'ss of exon 5
CTTGAACCGCATGTTCATCATCAATGCAGGTTCTGGATTCAGAATGTTGTGGAATACCGTTAAGTCATTCCTTGACCCAAAGACCACATCAAAAATCCATgtgagaacaaagacattttcttataatatctacctgtttttgtcaataaattaagatt--ttatctaattgagcttataatttaacag------------------
  |||| |||||||| ||||||||||| ||||||||||| ||  | |||||||| || ||||| || || ||||| || || ||||||||||| |||||||| || | |    ||| | ||| |  |    | || ||  | | ||| ||  ||  ||  |||   | |       |  ||| | |||                  
ACTGAATCGCATGTTTATCATCAATGCGGGTTCTGGATTTAGGCTATTGTGGAACACTGTTAAATCTTTTCTTGATCCCAAAACCACATCAAAGATCCATgtaagcata----catctccttgtgctg--aaacttttacttttaatcaaggaaatttagttaatcagtgagaggcaatattcaccaggttcttggtaataagttc

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192293921|gb|FG986130.1|FG986130
EST:     GGAATACCGTTAAGTCATTCCTTGACCCAAAGACCACATCAAAAATCCAT                         GTTCTTGGCAACAAGTATCAAAGCAAATTGCTTGAAATAATTGATGAGAG
genomic: GGAATACCGTTAAGTCATTCCTTGACCCAAAGACCACATCAAAAATCCATgtgagaacaa ... aatttaacagGTTCTTGGCAACAAGTATCAAAGCAAATTGCTTGAAATAATTGATGAGAG