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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATTTTCTTTTTAAATCAATCAAAGAAGATTCACCTTTAAAGGCCACAGATTTTGGTTTGTCAGATTTCATAAAACCTGgtgagggaaagtcttgattttcatgctcaatttctttatttttcttttcttccattttttgttgcaggcttgttctatttctttggttgagttatcaagcatgctcttgtaattttatttgagatttatttttctctatctgaaaaaaaatgcag

Basic information

species Glycine max
transcript GLYMA02G05440.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G05440.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os02g03410.2 (Oryza sativa), 5'ss of exon 5
AATTTTCTTTTTAAATCAATCAAAGAAGATTCACCTTTAAAGGCCACAGATTTTGGTTTGTCAGATTTCATAAAACCTGgtgagggaaagtcttgattttcatgctcaatttctttatttttcttttcttccattttttgttgcaggcttgttctatttctttggttgagttat-caagcatgctcttgtaattttatttgagatttatttttctctatctgaaaaaaaatgcag
|| || ||||| ||||||| ||| || || |||||||||||||| |||||||||||| ||||||| ||||||||||| |||      |  ||  ||  ||  |||| |  | | |  ||  | | | |||||| || ||| | | |  |||         |     |  |   | ||  |||  | || |    ||| |  ||                                
AACTTCCTTTTCAAATCAACCAAGGAGGACTCACCTTTAAAGGCAACAGATTTTGGTCTGTCAGACTTCATAAAACCAGgtattt--atttcaagagcttt-tgcttatgtgcatctttgctatgtgcttccaattgttgcttctgatttgagtaggacatacaagtctgcagttcattcattgttttctttcattactgtag--------------------------------

upper sequence: GLYMA02G05440.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G053868_T02 (Zea mays), 5'ss of exon 5
AATTTTCTTTTTAAATCAATCAAAGAAGATTCACCTTTAAAGGCCACAGATTTTGGTTTGTCAGATTTCATAAAACCTGgtgagggaaagtcttgattttcatgctcaatttctttatttttcttttcttccattttttgttgcaggcttgttctatttctttggttgagttatcaagcatgctcttgtaattttatttgagatttatttttctctatctgaaaaaaaatgcag
|| || ||||| ||||| | ||| || ||||||||  ||||||| |||||||||||||||||||||||||| || || |||      |  |  |      ||| || ||| | |      |    |     ||  | |    ||||  | |  ||     ||| ||||  | ||   ||||||| | |                                              
AACTTCCTTTTCAAATCGAACAAGGAGGATTCACCACTAAAGGCGACAGATTTTGGTTTGTCAGATTTCATTAAGCCAGgt------atctacttggggccat-ctgaatctgtcgggaatctgataggggcaagtct----gcagtttag--ctgaccattttgttgtctaat---gcatgctttag----------------------------------------------

upper sequence: GLYMA02G05440.1 (Glycine max), 5'ss of exon 5
lower sequence: AT4G36070.1 (Arabidopsis thaliana), 5'ss of exon 5
AATTTTCTTTTTAAATCAATCAAAGAAGATTCACCTTTAAAGGCCACAGATTTTGGTTTGTCAGATTTCATAAAACCTGgtgagggaaagtcttgattttcatgctcaatttctttatttttcttttcttccattttttgttgcaggcttgttctatttctttggttgagttatcaagcatgctcttgtaattttatttgagatttatttttctctatctgaaaaaaaatgcag
|||||||| || ||||||| | |||||| |||| || ||||||| |||||||||||| |||| || |||||||| || ||| |    |||| |   || ||| |     |  ||          |         |   |  || ||| |  || | |     |||  |                                                                  
AATTTTCTGTTCAAATCAACCGAAGAAGGTTCATCTCTAAAGGCTACAGATTTTGGTCTGTCGGACTTCATAAAGCCAGgtaa----aagtttcacttgtcaagtcttgtccctgagagcagaat-------ggtagataatggagg-tgattttgtgaaaatggcag------------------------------------------------------------------

upper sequence: GLYMA02G05440.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv04s0023g03420.t01 (Vitis vinifera), 5'ss of exon 5
AATTTTCTTTTTAAATCAATCAAAGAAGATTCACCTTTAAAGGCCACAGATTTTGGTTTGTCAGATTTCATAAAACCTGgtgagggaaagtcttgattttcatgctcaatttctttatttttcttttcttccattttttgttgcaggcttgttctatttctttggttgagttatcaagcatgctcttgtaattttatttgagatttatttttctctatctgaaaaaaaatgcag
||||||||||| || |||| |||||| || || ||||| |||||||| ||||||||| | ||||| |||||||| |||||| || |||| | | |  ||     |||||| | |  | |||    |    |||| |||  |    || ||   || ||  |       | |||  |   |||||  |    ||| | |||  |         ||  || |||| ||| |     
AATTTTCTTTTCAAGTCAACCAAAGAGGACTCGCCTTTGAAGGCCACGGATTTTGGTCTATCAGACTTCATAAAGCCTGgtaagtgaaa-tttcgcctt-----ctcaatatatggactttgaaat----ccatattt--tcatgggttt---ctgttgttcaaac--aattacaacatatgcttctagcttttgaattggaaaa------actgaatatgaataaacacag--