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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCTGCATCAAGGAAGGAGAATATTTGTTGTTGGTGATCTCAATATTGCACCATTTGCAATTGATCGATGTGATGCCGGACCTGATTTTGAAAATAACGAgtgagcttacagccagaattctatgaagtatttttaatgtctaatctaatatgctgataattatcttaacttttttgcctgaattcatgtgtag

Basic information

species Glycine max
transcript GLYMA02G05430.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G05430.1 (Glycine max), 5'ss of exon 5
lower sequence: AT4G36050.2 (Arabidopsis thaliana), 5'ss of exon 5
TCCTGCATCAAGGAAGGAGAATATTTGTTGTTGGTGATCTCAATATTGCACCATTTGCAATTGATCGATGTGATGCCGGACCTGATTTTGAAAATAACGAgtg---agcttacagccagaattctatgaagtatttttaatgt--ctaat--ctaatatgctgataattatcttaacttttttgcctgaattcatgtgtag
| |||| ||||||||||||  ||||||||||||| |||||||| ||||| || ||||| || ||||||||||| || || ||||||||||| || |||||||    | || |    ||   |    | || |   |||  | |   ||||   |  |   ||  ||  ||||| |  |||  || |   |   |  || ||
TTCTGCGTCAAGGAAGGAGGGTATTTGTTGTTGGGGATCTCAACATTGCTCCTTTTGCTATGGATCGATGTGAAGCTGGGCCTGATTTTGAGAAAAACGAgtatgtaactgattctcatgctctgtttaaatcgctttgctttacttaataattttttctctactagatatctca-ttttcatgtcattaaaaaaatgcag

upper sequence: GLYMA02G05430.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv04s0023g03440.t01 (Vitis vinifera), 5'ss of exon 5
TCCTGCATCAAGGAAGGAGAATATTTGTTGTTGGTGATCTCAATATTGCACCATTTGCAATTGATCGATGTGATGCCGGACCTGATTTTGAAAATAACGAgtgagcttacagccagaattctatgaagtatttttaatgtct--aatctaatatgctgataattatcttaacttttttgcctgaattcatgtgtag-------
||| ||| || || ||||| |||||||||||||||||||| |||||||| ||   ||| || ||||| |||||||| ||||| |||||||| || || |||| || || | | || | ||||||| |||   ||||    |   || |  |  | |    ||  ||    || |       ||  |  |||| | |       
TCCAGCAGCAGGGGAGGAGGATATTTGTTGTTGGTGATCTTAATATTGCTCCTGCTGCTATAGATCGCTGTGATGCTGGACCAGATTTTGAGAAGAATGAgtaag-ttgctggcaaatttctatgtagtgcctttaccaccctcaaccctaacttcccccaaccatac--acctacacaaatgtgtctatgtttggagttgtt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207680791|gb|GD663232.1|GD663232
EST:     CCATTTGCAATTGATCGATGTGATGCCGGACCTGATTTTGAAAATAACGA                         GTTTAGAAAATGGTTCAAATCAATGTTAATTGAAAATGGGGGTCGATTTTC
genomic: CCATTTGCAATTGATCGATGTGATGCCGGACCTGATTTTGAAAATAACGAgtgagcttac ... tcatgtgtagGTTTAGAAAATGGTTCAAATCAATGTTAATTGAAAATGGGGGTCGATTTTC