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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAAGTTGGAGGCACTCCTTTCAGCTGTTAACAATAATGATACCAGCCACATTGTTCATGTTCCATCTGGTCCAAACGCTCTTTCTGATGTACTAATAAGgttagtggttttatttctttatcttcccttgtactcactactcagtattcccagttgagtaatatagaagttatttttttaggtttccctattgcttcta...

Basic information

species Glycine max
transcript GLYMA02G05250.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G05250.2 (Glycine max), 5'ss of exon 5
lower sequence: Vv04s0023g03620.t01 (Vitis vinifera), 5'ss of exon 5
AGAAGTTGGAGGCACTCCTTTCAGCTGTTAACAATAATGATACCAGCCACATTGTTCATGTTCCATCTGGTCCAAACGCTCTTTCTGATGTACTAATAAGgttagtggttttatttctttatcttcccttgtactcactactcagtattcccagttgagtaatatag---aagttatttttttaggtttccctattgcttcta----------
||||  | ||||| || |||    |||| ||||| |||||||  |||||||| |||||||||||  |||||||||| ||||||||||| || || ||||||| | ||||    |||| || | ||   || |  |     |     |||   ||   | ||  | ||   || ||  | || ||  ||    | ||   | |           
AGAAACTTGAGGCCCTTCTTGGTTCTGTAAACAACAATGATAGTAGCCACATAGTTCATGTTCCTGCTGGTCCAAATGCTCTTTCTGACGTGCTTATAAGgtaactggtcaactttcattttttttttttttcattctcgcatgacattgt-agaaaattatgacagtgtaatttcatcttatatattcttttgttttgtttcctcatggcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193700720|gb|FK635573.1|FK635573
EST:     ATTGTTCATGTTCCATCTGGTCCAAACGCTCTTTCTGATGTACTAATAAG                         TACTCCTATTTTTACTGGTGATGGAGAAGGTGGAAGTGGTTTTGCAGCAGC
genomic: ATTGTTCATGTTCCATCTGGTCCAAACGCTCTTTCTGATGTACTAATAAGgttagtggtt ... cttgtggcagTACTCCTATTTTTACTGGTGATGGGGAAGGTGGAAGTGGTTTTGCAGCAGC
EST: gi|193672270|gb|FK617590.1|FK617590
EST:     ATTGTTCATGTTCCATCTGGTCCAAACGCTCTTTCTGATGTACTAATAAG                         TACTCCTATTTTTACTGGTGATGGAGAAGGTGGAAGTGGTTTTGCAGCAGC
genomic: ATTGTTCATGTTCCATCTGGTCCAAACGCTCTTTCTGATGTACTAATAAGgttagtggtt ... cttgtggcagTACTCCTATTTTTACTGGTGATGGGGAAGGTGGAAGTGGTTTTGCAGCAGC
EST: gi|193478287|gb|FK445760.1|FK445760
EST:     ATTGTTCATGTTCCATCTGGTCCAAACGCTCTTTCTGATGTACTAATAAG                         TACTCCTATTTTTACTGGTGATGGAGAAGGTGGAAGTGGTTTTGCAGCAGC
genomic: ATTGTTCATGTTCCATCTGGTCCAAACGCTCTTTCTGATGTACTAATAAGgttagtggtt ... cttgtggcagTACTCCTATTTTTACTGGTGATGGGGAAGGTGGAAGTGGTTTTGCAGCAGC
EST: gi|254335038|gb|GR844823.1|GR844823
EST:     ATTGTTCATGTTCCATCTGGTCCAAACGCTCTTTCTGATGTACTAATAAG                         TACTCCTATTTTTACTGGTGATGGGGAAGGTGGAAGTGGTTTTGCAGCAGC
genomic: ATTGTTCATGTTCCATCTGGTCCAAACGCTCTTTCTGATGTACTAATAAGgttagtggtt ... cttgtggcagTACTCCTATTTTTACTGGTGATGGGGAAGGTGGAAGTGGTTTTGCAGCAGC