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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTACCCGAATGCCTTCGCATTATTGGATATTTACGGCGAATAGGAGTATTTAGTGAGTATGGAATGCGTTTGCTGgtgaggtttaatgatttttttccatacaaactttctttgtccttgttgcttgtcttttaccttgaaattttcagtttagttgcagctccttggtacttttaatttctggcttccatttgactcaacggttgtttattgtcag

Basic information

species Glycine max
transcript GLYMA02G04920.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G04920.1 (Glycine max), 5'ss of exon 5
lower sequence: AT5G11980.1 (Arabidopsis thaliana), 5'ss of exon 6
TTACCCGAATGCCTTCGCATTATTGGATATTTACGGCGAATAGGAGTATTTAGTGAGTATGGAATGCGTTTGCTGgtgaggtttaatgatttttttccatacaaactttctttgtcct-tgttgcttgtcttttaccttgaaattttcagtttagttgcagctccttggtacttttaatttctggcttccatttgactcaacggttgtttattgtcag
||||| ||||| || |||||||||||||| ||||| |||||||| || ||| | ||||||| |||||| || | |||||  | |  |||  | |  |  |  |   | || ||    |   |||  |  ||||  |  || |||| |   ||  ||   |||||  ||       |  ||  ||| |     ||| ||   | |              
TTACCAGAATGTCTCCGCATTATTGGATACTTACGCCGAATAGGTGTCTTTGGCGAGTATGAAATGCGATTACAGgtgaaatattttgacatataacatttgaggttatccttccattacattgtattcctttgtctatggaattgttcattctgta--agctc--tgtcttcacttgttaatggatctt-cttgtctatgcag--------------

upper sequence: GLYMA02G04920.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv04s0008g01350.t01 (Vitis vinifera), 5'ss of exon 6
TTACCCGAATGCCTTCGCATTATTGGATATTTACGGCGAATAGGAGTATTTAGTGAGTATGGAATGCGTTTGCTGgtgaggttt-aatgatttttttccatacaaactttctttgtccttgttgcttgtcttttaccttgaaattttcagtttagttgcagctccttggtacttttaatttctggcttccatttgactcaacggttgtttattgtcag
||||| || || || |||||||||||||||||||| |||||||||||||||||||||| || ||||||||| | |||    | | |||  | ||| | |||  | |   || |  | ||  | | ||  ||||||  |      ||  | || |     | ||  |  ||  | |                                           
TTACCAGATTGTCTCCGCATTATTGGATATTTACGTCGAATAGGAGTATTTAGTGAGTTTGAAATGCGTTTACAGgtattttctgaattctctttgttcatgaatatgctcatgtttctgatagatt--cttttatgt----gcttgtatttgaccaagatcttttatgtgatatag-----------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254335101|gb|GR844886.1|GR844886
EST:     GATATTTACGGCGAATAGGAGTATTTAGTGAGTATGGAATGCGTTTGCTG                         TTCTTAAGATGCCGAGAGGCATGGCTTACTGGTATACTCGAGGATCTGGAC
genomic: GATATTTACGGCGAATAGGAGTATTTAGTGAGTATGGAATGCGTTTGCTGgtgaggttta ... ttattgtcagTTCTTAAGATGCCGAGAGGCATGGCTTACTGGTATACTCGAGGATCTGGAC
EST: gi|254341548|gb|GR852685.1|GR852685
EST:     GATATTTACGGCGAATAGGAGTATTTAGTGAGTATGGAATGCGTTTGCTG                         TTCTTAAGATGCCGAGAGGCATGGCTTACTGGTATACTCGAGGATTTGGAC
genomic: GATATTTACGGCGAATAGGAGTATTTAGTGAGTATGGAATGCGTTTGCTGgtgaggttta ... ttattgtcagTTCTTAAGATGCCGAGAGGCATGGCTTACTGGTATACTCGAGGATCTGGAC
EST: gi|151410266|gb|EV280081.1|EV280081
EST:     GATATTTACGGCGAATAGGAGTATTTAGTGAGTATGGAATGCGTTTGCTG                         TTCTTAAGATGCCGAGAGGCATGGCTTACTGGTATACTCGAGGATCTGGAC
genomic: GATATTTACGGCGAATAGGAGTATTTAGTGAGTATGGAATGCGTTTGCTGgtgaggttta ... ttattgtcagTTCTTAAGATGCCGAGAGGCATGGCTTACTGGTATACTCGAGGATCTGGAC