Sequence
atgc intronic sequence ATGC exonic sequenceAAAATTGAAAGTGTTGAAGGAAATAGCTAAGGAACATCATATTGATTGGGATACTACAGATAGCGAGAAAGAACTTCTCAAGCCTCCAGAAGAGCTAATAgtacgttttgtgtcttggtctcccttgcttgcttatgctttgtctcaaattttcattgatgatttggctctttctctcgtcag
Basic information
species | Glycine max |
transcript | GLYMA02G04900.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA02G04900.1 (Glycine max), 5'ss of exon 5
lower sequence: AT4G35730.1 (Arabidopsis thaliana), 5'ss of exon 5
AAAATTGAAAGTGTTGAAGGAAATAGCTAAGGAACATCATATTGATTGGGATACTACAGATAGCGAGAAAGAACTTCTCAAGCCTCCAGAAGAGCTAATAgtacgttttgtgtcttggtctcccttgcttgcttatgctttgtctcaaattttcat-tgatgatttggctctttctctcgtcag
||| ||||| | |||||||||| || |||||| || ||||||||||||||||||| | ||| ||||||||||||| |||| |||||| |||||| || | | | ||| | ||| || | | || | |||| || | | | || | |||| |
CAAACTGAAAATCATGAAGGAAATTGCAAAGGAATTCCAGGTTGATTGGGATACTACAGAGACAGAGCAAGAACTTCTCAAACCTCAAGAAGAAAGCATAgtatgtctcttaatctcccctctca-acttcctctttcattattcaaaatcagaatcttagaagctgtgttcttcttgcag---
upper sequence: GLYMA02G04900.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv00s1235g00010.t01 (Vitis vinifera), 5'ss of exon 5
AAAATTGAAAGTGTTGAAGGAAATAGCTAAGGAACATCATATTGATTGGGATACTACAGATAGCGAGAAAGAACTTCTCAAGCCTCCAGAAGAGCTAATAgtacgttttgtgtcttggtctcccttgcttgcttatgctttgtctcaaattttcattgatgatttg-gctctttctctcg-tcag
||| |||||||| ||||||||||||| |||||| | || || || |||||||| || || ||||| || ||||||||||||||||||||||| ||||| ||| || | |||| | || || | || | || ||| ||| || | ||||||| | | ||||
AAAGTTGAAAGTCATGAAGGAAATAGCAAAGGAATACCAGATCGAATGGGATACAACTGAATCAGAGAATGAGCTTCTCAAGCCTCCAGAAGAGCTTATAgtttgttctgctt-----tctctatctctcatttgaaatcaa-cttactattctattactgacctgcgatctttcttttgatcag
upper sequence: GLYMA02G04900.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv00s0302g00010.t01 (Vitis vinifera), 5'ss of exon 3
AAAATTGAAAGTGTTGAAGGAAATAGCTAAGGAACATCATATTGATTGGGATACTACAGATAGCGAGAAAGAACTTCTCAAGCCTCCAGAAGAGCTAATAgtacgttttg-tgtcttggtctcccttgcttgcttatgctttgtctcaaattttcattgatgatttg-gctctttctctcg-tcag
||| |||||||| ||||||||||||| |||||| | || || || |||||||| || || ||||| || ||||||||||||||||||||||| ||||| ||| || | ||| | || || || | || | || ||| ||| || | ||||||| | | ||||
AAAGTTGAAAGTCATGAAGGAAATAGCAAAGGAATACCAGATCGAATGGGATACAACTGAATCAGAGAATGAGCTTCTCAAGCCTCCAGAAGAGCTTATAgtttgttctgctttctctatatctctcatgtg-----aaatcaacttactattctattactgacctgcgatctttcttttgatcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|26268960|gb|CA820023.1|CA820023EST: ATACTACAGATAGCGAGAAAGAACTTCTCAAGCCTCCAGAAGAGCTAATA GTAGGGCCAAGTGCTTTTGTCAGTGCCAGCAGCCTACCAGTGAAGCCTTCT
genomic: ATACTACAGATAGCGAGAAAGAACTTCTCAAGCCTCCAGAAGAGCTAATAgtacgttttg ... ctctcgtcagGTAGGGCCAAGTGCTTTTGTCAGTGCCAGCAGCCTACCAGTGAAGCCTTCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AAAATTGAAAGTGTTGAAGGAAATAGCTAAGGAACATCATATTGATTGGGATACTACAGATAGCGAGAAAGAACTTCTCAAGCCTCCAGAAGAGCTAATAgtacgttttgtgtcttggtctcccttgcttgcttatgctttgtctcaaattttcattgatgatttggctctttctctcgtcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT