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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAAAATCCTGATCTATATGGCGAACTTGCCAAAGGCCAGAGCCCAAAGgtcagccatgttatcagttgcatactcactaatcactagctagttagttacttaattagtcttcttaattactaattgccctttgggtttgggcacatgc...

Basic information

species Glycine max
transcript GLYMA02G03990.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192315191|gb|FK010015.1|FK010015
EST:     GAAAAATCCTGATCTATATGGCGAACTTGCCAAAGGCCAGAGCCCAAAG                         TTTATGGTATTTGCATGCTCAGATTCGAGAGTTTGTCCATCTCATATTCTG
genomic: GAAAAATCCTGATCTATATGGCGAACTTGCCAAAGGCCAGAGCCCAAAGgtcagccatg ... acacatgcagTTTATGGTATTTGCATGCTCAGATTCGAGAGTTTGTCCATCTCATATTCTG
EST: gi|298175511|gb|HO018222.1|HO018222
EST:     GAAAAATCCTGATCTATATGGCGAACTTGCCAAAGGCCAGAGCCCAAAG                         TTTATGGTATTTGCATGCTCAGATTCGAGAGTTTGTCCATCTCATATTCTG
genomic: GAAAAATCCTGATCTATATGGCGAACTTGCCAAAGGCCAGAGCCCAAAGgtcagccatg ... acacatgcagTTTATGGTATTTGCATGCTCAGATTCGAGAGTTTGTCCATCTCATATTCTG
EST: gi|298195403|gb|HO039234.1|HO039234
EST:     GAAAAATCCTGATCTATATGGCGAACTTGCCAAAGGCCAGAGCCCAAAG                         TTTATGGTATTTGCATGCTCAGATTCGAGAGTTTGTCCATCTCATATTCTG
genomic: GAAAAATCCTGATCTATATGGCGAACTTGCCAAAGGCCAGAGCCCAAAGgtcagccatg ... acacatgcagTTTATGGTATTTGCATGCTCAGATTCGAGAGTTTGTCCATCTCATATTCTG
EST: gi|20449478|gb|BQ253602.1|BQ253602
EST:     GAAAAATCCTGATCTATATGGCGAACTTGCCAAAGGCCAGAGCCCAAAG                         TTTATGGTATTTGCATGCTCAGATTCGAGAGTTTGTCCATCTCATATTCTG
genomic: GAAAAATCCTGATCTATATGGCGAACTTGCCAAAGGCCAGAGCCCAAAGgtcagccatg ... acacatgcagTTTATGGTATTTGCATGCTCAGATTCGAGAGTTTGTCCATCTCATATTCTG
EST: gi|23064138|gb|BU578911.1|BU578911
EST:     GAAAAATCCTGATCTATATGGCGAACTTGCCAAAGGCCAGAGCCCAAAG                         TTTATGGTATTTGCATGCTCAGATTCGAGAGTTTGTCCATCTCATATTCTG
genomic: GAAAAATCCTGATCTATATGGCGAACTTGCCAAAGGCCAGAGCCCAAAGgtcagccatg ... acacatgcagTTTATGGTATTTGCATGCTCAGATTCGAGAGTTTGTCCATCTCATATTCTG
EST: gi|13480785|gb|BG510128.1|BG510128
EST:     GAAAAATCCTGATCTATATGGCGAACTTGCCAAAGGCCAGAGCCCAAAG                         TTTATGGTATTTGCATGCTCAGATTCGAGAGTTTGTCCATCTCATATTCTG
genomic: GAAAAATCCTGATCTATATGGCGAACTTGCCAAAGGCCAGAGCCCAAAGgtcagccatg ... acacatgcagTTTATGGTATTTGCATGCTCAGATTCGAGAGTTTGTCCATCTCATATTCTG
EST: gi|192312289|gb|FK005293.1|FK005293
EST:     GAAAAATCCTGATCTATATGGCGAACTTGCCAAAGGCCAGAGCCCAAAG                         TTTATGGTATTTGCATGCTCAGATTCGAGAGTTTGTCCATCTCATATTCTG
genomic: GAAAAATCCTGATCTATATGGCGAACTTGCCAAAGGCCAGAGCCCAAAGgtcagccatg ... acacatgcagTTTATGGTATTTGCATGCTCAGATTCGAGAGTTTGTCCATCTCATATTCTG
EST: gi|20813541|gb|BQ298019.1|BQ298019
EST:     GAAAAATCCTGATCTATATGGCGAACTTGCCAAAGGCCAGAGCCCAAAG                         TTTATGGGATTTGCATGCTCAGATTCGAGAGGTTGTCCATCTCATATTCTG
genomic: GAAAAATCCTGATCTATATGGCGAACTTGCCAAAGGCCAGAGCCCAAAGgtcagccatg ... acacatgcagTTTATGGTATTTGCATGCTCAGATTCGAGAGTTTGTCCATCTCATATTCTG
EST: gi|20813542|gb|BQ298020.1|BQ298020
EST:     GAAAAATCCTGATCTATATGGCGAACTTGCCAAAGGCCAGAGCCCAAAG                         TTTATGGTATTTGCATGCTCAGATTCGAGAGTTTGTCCATCTCATATTCTG
genomic: GAAAAATCCTGATCTATATGGCGAACTTGCCAAAGGCCAGAGCCCAAAGgtcagccatg ... acacatgcagTTTATGGTATTTGCATGCTCAGATTCGAGAGTTTGTCCATCTCATATTCTG