Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACCCTAGGACTTGGGAAGCCCAGTTCCTGTCTGGTATAAAGgtactatggcactcatatatgcaaaccccccttggttttcatacaaaatctcctttctctattaatttaatcaattatatatctttcag

Basic information

species Glycine max
transcript GLYMA02G03740.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207819356|gb|GD792818.1|GD792818
EST:     CTGGTATAAAG                         ACCATAGCTCTCATTGCTGTAAGAGAAGGTGTTGTTCAATTAGGAGCTGTT
genomic: CTGGTATAAAGgtactatggc ... tatctttcagACCATAGCTCTCATTGCTGTAAGAGAAGGTGTTGTTCAATTAGGAGCTGTT
EST: gi|151393888|gb|EV263759.1|EV263759
EST:     CACCCTAGGACTTGGGAAGCCCAGTTCCTGTCTGGTATAAAG                         ACCATAGCTCTCATTGCTGTAAGAGAAGGTGTTGTTCAATTAGGAGCTGTT
genomic: CACCCTAGGACTTGGGAAGCCCAGTTCCTGTCTGGTATAAAGgtactatggc ... tatctttcagACCATAGCTCTCATTGCTGTAAGAGAAGGTGTTGTTCAATTAGGAGCTGTT
EST: gi|10232292|gb|BE801180.1|BE801180
EST:     CACCCTAGGACTTGGGAAGCCCAGATCCTGTCTGGTATAAAG                         ACCATAGCTCTCATTGCTGTAAGAGAAGGTGTTGTTCAATTAGGAGCTGTT
genomic: CACCCTAGGACTTGGGAAGCCCAGTTCCTGTCTGGTATAAAGgtactatggc ... tatctttcagACCATAGCTCTCATTGCTGTAAGAGAAGGTGTTGTTCAATTAGGAGCTGTT
EST: gi|192306018|gb|FG993636.1|FG993636
EST:     CACCCTAGGACTTGGGAAGCCCAGTTCCTGTCTGGTATAAAG                         ACCATAGCTCTCATTGCTGTAAGAGAAGGTGTTGTTCAATTAGGAGCTGTT
genomic: CACCCTAGGACTTGGGAAGCCCAGTTCCTGTCTGGTATAAAGgtactatggc ... tatctttcagACCATAGCTCTCATTGCTGTAAGAGAAGGTGTTGTTCAATTAGGAGCTGTT
EST: gi|207834807|gb|GD809032.1|GD809032
EST:     CTGGTATAAAG                         ACCATAGCTCTCATTGCTGTAAGAGAAGGTGTTGTTCAATTAGGAGCTGTT
genomic: CTGGTATAAAGgtactatggc ... tatctttcagACCATAGCTCTCATTGCTGTAAGAGAAGGTGTTGTTCAATTAGGAGCTGTT
EST: gi|209709438|gb|BW668366.1|BW668366
EST:     CACCCTAGGACTTGGGAAGCCCAGTTCCTGTCTGGTATAAAG                         ACCATAGCTCTCATTGCT
genomic: CACCCTAGGACTTGGGAAGCCCAGTTCCTGTCTGGTATAAAGgtactatggc ... tatctttcagACCATAGCTCTCATTGCT
EST: gi|151396617|gb|EV266494.1|EV266494
EST:     CACCCTAGGACTTGGGAAGCCCAGTTCCTGTCTGGTATAAAG                         ACCATAGCTCTCATTGCTGTAAGAGAAGGTGTTGTTCAATTAGGAGCTGTT
genomic: CACCCTAGGACTTGGGAAGCCCAGTTCCTGTCTGGTATAAAGgtactatggc ... tatctttcagACCATAGCTCTCATTGCTGTAAGAGAAGGTGTTGTTCAATTAGGAGCTGTT