Sequence
atgc intronic sequence ATGC exonic sequenceCTACATCAAAGTTAATGGCCAGATCCTTGGGGCTGCAGAGTTTGACAACACCTTTGGGTGGGATAACAAGCATGCTGGAGCAAGAATACTTCTTTCCAAGgtccaaaaaataactccatcacatgtattctgctttatattgcaaaactagaaaaagtaaaaacaaataatggtttgaaatttacatttttgtgttccatgttttag
Basic information
species | Glycine max |
transcript | GLYMA02G01990.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA02G01990.1 (Glycine max), 5'ss of exon 5
lower sequence: AT4G02290.1 (Arabidopsis thaliana), 5'ss of exon 4
CTACATCAAAGTTAATGGCCAGATCCTTGGGGCTGCAGAGTTTGACAACACCTTTGGGTGGGATAACAAGCATGCTGGAGCAAGAATACTTCTTTCCAAGgtccaaaaaataactccatcacatgtattctgctttatattgcaaaactagaaaaagtaaaaacaaataatggtttgaaatttacatttttgtgttccatgttttag
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TTACATAAAAATCAATGGACAAATCCTTGGAGCTGCTGAATATGATAACACTTTTGGTTGGGATAACAAGCACGCTGGTGCCAGAATCCTTCTTACTAAGgt--aaaatctaaatttataaagt----tttgttatat----caagtcc--------------ctaattatt-tttgttggttttttttttgtgtaaag--------
upper sequence: GLYMA02G01990.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv07s0005g00740.t01 (Vitis vinifera), 5'ss of exon 5
CTACATCAAAGTTAATGGCCAGATCCTTGGGGCTGCAGAGTTTGACAACACCTTTGGGTGGGATAACAAGCATGCTGGAGCAAGAATACTTCTTTCCAAGgtccaaaaaataactccatcacatgtattctgctttatattgcaaaactagaaaaagtaaaaacaaataatggtttgaaatttacatttttgtgttccatgttttag
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CTACATTCAAGTAAATGGCCAGACCCTTGGGGCTGATGATTCTGACAATACATTTGGATGGGATAACAAGCATGTTGGAGCAAGGATTCTTCTCTCTAAGgtcccattctcatctc-atcac-tgcttttcaatttctttttc----ttagaact--------tcaatcatgcctt----ttttcatcaattttttcag--------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|19345934|gb|BM890814.1|BM890814EST: CCTTTGGGTGGGATAACAAGCATGCTGGAGCAAGAATACTTCTTTCCAAG GAATTCCTGGTTCAAAGGGTACAATCCCTCCATGACTACAAGGGGCATGCG
genomic: CCTTTGGGTGGGATAACAAGCATGCTGGAGCAAGAATACTTCTTTCCAAGgtccaaaaaa ... catgttttagGAATTCCTGGTTCAAAGGGTACAATCCCTCCATGACTACAAGGGGCATGCG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTACATCAAAGTTAATGGCCAGATCCTTGGGGCTGCAGAGTTTGACAACACCTTTGGGTGGGATAACAAGCATGCTGGAGCAAGAATACTTCTTTCCAAGgtccaaaaaataactccatcacatgtattctgctttatattgcaaaactagaaaaagtaaaaacaaataatggtttgaaatttacatttttgtgttccatgttttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA