Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATGCGGAAGGATATACTAACAGAAGATGAGGCCAGGTTCTATGTTGGGGAGACTGTCCTAGCCATAGAGTCAATTCATAAACATAATTATATCCACAGgtaagctcaaagctgtaaaaaaataacgtcaaatgatggtaaattttggtatgcttttatgacacggatcaatgatacttatggcggtcttcgtctggatcaataaatatttttaataatctgatttttaaatgcattccag

Basic information

species Glycine max
transcript GLYMA02G00580.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G00580.2 (Glycine max), 5'ss of exon 5
lower sequence: AT3G23310.1 (Arabidopsis thaliana), 5'ss of exon 5
TGATGCGGAAGGATATACTAACAGAAGATGAGGCCAGGTTCTATGTTGGGGAGACTGTCCTAGCCATAGAGTCAATTCATAAACATAATTATATCCACAGgtaagctcaaagctgtaaaaaaataacgtcaaatgatggtaaattttggtatgcttttatgacacggatcaatgatacttatggcggtcttcgtctggatcaataaatatttttaataatctgatttttaaatgcattccag
| ||| |||| || | ||| || ||||||||||| || || ||||||||||| |||||| |||| || ||||| |||||||| || ||||||||||||||||    |  ||||  | ||  |     || || |  | |   ||  |  |    ||||      | || ||   ||     |  |    ||  |   |                                            
TTATGAGGAAAGACACACTTACTGAAGATGAGGCAAGATTTTATGTTGGGGAAACTGTCTTAGCTATCGAGTCCATTCATAAGCACAATTATATCCACAGgtctagt-gaagcaatcaactatctgagtaaatttgtagcgtatcatttttcttttttggtgttctgaccatccatttacttctccaatttgttacag--------------------------------------------

upper sequence: GLYMA02G00580.2 (Glycine max), 5'ss of exon 5
lower sequence: AT4G14350.3 (Arabidopsis thaliana), 5'ss of exon 5
TGATGCGGAAGGATATACTAACAGAAGATGAGGCCAGGTTCTATGTTGGGGAGACTGTCCTAGCCATAGAGTCAATTCATAAACATAATTATATCCACAGgtaagctcaaagctgtaaaaaaataacgtcaaatgatggtaaattttggtatgcttttatgacacggatcaatgatacttatggcggtcttcgtctggatcaataaatatttttaataatctgatttttaaatgcattccag
| ||| |||| || |  || || ||||| ||||||||||| ||| ||||||| |||||||| || || ||||| |||||||| || || || || ||||||| ||    ||||    | || |||   |  | |  | |      ||| |||  | || | | |||  |   |    |  |||  | |                                                      
TTATGAGGAAAGACACCCTCACTGAAGACGAGGCCAGGTTTTATATTGGGGAAACTGTCCTGGCTATTGAGTCCATTCATAAGCACAACTACATTCACAGgtcag--tgaagc----agaatatatgatttagttctagctcccattgttattttgttctaa-acgtctttttttctccaatg-tgatacag--------------------------------------------------

upper sequence: GLYMA02G00580.2 (Glycine max), 5'ss of exon 5
lower sequence: Vv05s0049g01220.t01 (Vitis vinifera), 5'ss of exon 4
TGATGCGGAAGGATATACTAACAGAAGATGAGGCCAGGTTCTATGTTGGGGAGACTGTCCTAGCCATAGAGTCAATTCATAAACATAATTATATCCACAGgtaagctcaaagctgtaaaaaaataacgtcaaatgatggtaaattttggtatgcttttatgacacggatcaatgatacttatggcggtcttcgtctggatcaataaatatttttaataatctgatttttaaatgcattccag
||||||| |||||||   | || |||||||||||||| || |||||||| || || ||||| || || ||||| || ||||| ||||||||||| || ||||  |   ||   | ||  |  ||    |       ||| ||   |  | |||||| |    || |  | ||  |     ||  |  ||| | | |  |   || |                                    
TGATGCGAAAGGATACTTTGACTGAAGATGAGGCCAGATTTTATGTTGGTGAAACCGTCCTTGCTATCGAGTCCATCCATAAGCATAATTATATTCATAGgtttgtgtaagattttatcatgattgtat------gtgggaaccatatgcatgcttctg-atcatgacttaagaa--gcaataaccctctccatatttacttattacag---------------------------------