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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCgtaagtcggagacaccaggagaaaccgagggctgtaaacgctgcaattgcaagaaatcaaagtgtttgaagctgtaagttaaaattaattttatattatt...

Basic information

species Glycine max
transcript GLYMA01G44670.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G44670.2 (Glycine max), 5'ss of exon 5
lower sequence: AT3G22780.1 (Arabidopsis thaliana), 5'ss of exon 5
GCGTAAGTCGgagacaccaggagaaaccgagggctgtaaacgctgcaattgcaagaaatcaaagtgtttgaagctgtaagttaaaattaattt-tatattatt-------------------------------------------------------------------------------
|||||| || ||   | | || ||    |||   |||||||| ||||| ||||| || || ||||||||||||||||||| | | |     |   || |  ||                                                                               
GCGTAAATCTGAACAAGCTGGGGAGGGTGAGTCATGTAAACGATGCAACTGCAAAAAGTCTAAGTGTTTGAAGCTgtaagctcataccccctagcatctcgttaattcctacctgttcaaaataaaaaactgaattgccttgaagtagttaaccattgtttgactcccttttctttctgcag

upper sequence: GLYMA01G44670.2 (Glycine max), 5'ss of exon 5
lower sequence: AT3G22760.1 (Arabidopsis thaliana), 5'ss of exon 5
GCGTAAGTCGgagacaccaggagaaaccga---gggctgtaaacgctgcaattgcaagaaatcaaagtgtttgaagctgtaagttaaa---attaat-tttatattatt------------------------------------------------
||||||||| ||   | ||||||||  |||   |   |||||||| ||||| ||||| ||||| ||||||||||||||||||||| ||   |  ||| |||   ||  |                                                
GCGTAAGTCCGAACAATCAGGAGAAGGCGACTCGTCATGTAAACGGTGCAACTGCAAAAAATCCAAGTGTTTGAAGCTgtaagttgaatacaccaatctttggcttgctttgaagtagttttttgttgagtctcttgtactgtgtttccctctgcag

upper sequence: GLYMA01G44670.2 (Glycine max), 5'ss of exon 5
lower sequence: Vv05s0020g03880.t01 (Vitis vinifera), 5'ss of exon 6
GCGTAAGTCGgagacaccaggagaaaccgagggctgtaaacgctgcaattgcaagaaatcaaagtgtttgaagctgtaagttaaaattaattttatattatt---------------------------------------------------------------------------
||||| || |||       |||||||| |||||||| || ||||| || ||||||||||| || || ||||||||||||||    ||  ||||| | | |||                                                                           
GCGTAGGTTGGAACATGGTGGAGAAACTGAGGGCTGCAAGCGCTGTAACTGCAAGAAATCTAAATGCTTGAAGCTgtaagtccttat--attttgtttcattttgaattaaaacaaggtagttcagagtccagatttaatgtgcttacgaatggttggctatatttaagtctcggtt