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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAGAAGGTTGCAGGGATTTTATTTAATCAATGGGCAACATTATGATTCGTTCTTATTCTTGTACTATGTAAATGGGGGACAGTCTCCTTGCTCACCATTgtaagtaccaaataccttttgatttttatcccttgatttgttcagattagtcttactgttatgctttaaatgaatcctgttatagatagtgtagaggttt...

Basic information

species Glycine max
transcript GLYMA01G44350.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G44350.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os02g46700.1 (Oryza sativa), 5'ss of exon 4
TGAGAAGGTTGCAGGGATTTTATTTAATCAATGGGCAACATTATGATTCGTTCTTATTCTTGTACTATGTAAATGGGGGACAGTCTCCTTGCTCACCATTgtaagtaccaaataccttttgatttttatcccttga----tttgttcagattagtcttac--tgttatgctttaaatgaatcctgttatagatagt-gtagaggttt
| ||| |  | |     || ||||  || |  ||||| ||||||||||| | ||| ||  |||||||||| |||||||| |  || |||||||||||| ||||||||     |    |||   |       | ||     ||||||   | ||||  | |  || | || || ||  | ||  |  |||    ||| ||        
TCAGACGACTTCCACATTTCTATTACATAAGAGGGCAGCATTATGATTCATACTTGTTTGTGTACTATGTCAATGGGGGCCGTTCGCCTTGCTCACCACTgtaagtatttcttgttctttatctggagaagcatgcaagttttgtttttagtagttatccgatgctgtgtttcaataggattttactatctgcagttgtc-------

upper sequence: GLYMA01G44350.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv16s0039g01810.t01 (Vitis vinifera), 5'ss of exon 9
TGAGAAGGTTGCAGGGATTTTATTTAATCAATGGGCAACATTATGATTCGTTCTTATTCTTGTACTATGTAAATGGGGGACAGTCTCCTTGCTCACCATTgtaagtaccaaataccttttgatttttatcccttgatttgttcagattagtcttactgttatgctttaaatgaatcctgttata--gatagtgtagaggttt-----
|| ||||| |||| |  ||||| || |||||||| || ||||||||||| | ||||||| | |||||||||||||| || |  ||||| ||||||||||||||||||| ||| ||      ||  || ||| |   |||   | | |   || |   |||  |     |||   | ||| | |     || |||  |  |       
TGCGAAGGCTGCATGATTTTTACTTCATCAATGGTCAGCATTATGATTCATACTTATTCGTTTACTATGTAAATGGCGGTCGATCTCCATGCTCACCATTgtaagtacaaaa-ac------atccttttccttgagtttacacggttatatcctgtggtttggtggagaatagtttctgctctgttattaatgtgaaaataaaacaa
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151395449|gb|EV265326.1|EV265326
EST:     TTCTTATTCTTGTACTATGTAAATGGGGGACAGTCTCCTTGCTCACCATT                         AGAGTTTCTCACTGCAATAGTAAGCTACATGAAGAGTGGCTTTAACTCAGT
genomic: TTCTTATTCTTGTACTATGTAAATGGGGGACAGTCTCCTTGCTCACCATTgtaagtacca ... cacatttcagAGAGTTTCTCACTGCAATAGTAAGCTACATGAAGAGTGGCTTTAACTCAGT
EST: gi|192307558|gb|FG999597.1|FG999597
EST:     TTCTTATTCTTGTACTATGTAAATGGGGGACAGTCTCCTTGCTCACCATT                         AGAGTTTCTCACTGCAATAGTAAGCTACATGAAGAGTGGCTTTAACTCAGT
genomic: TTCTTATTCTTGTACTATGTAAATGGGGGACAGTCTCCTTGCTCACCATTgtaagtacca ... cacatttcagAGAGTTTCTCACTGCAATAGTAAGCTACATGAAGAGTGGCTTTAACTCAGT