Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCAGCAATTATAATTGGTACTGGTACAAATGCCTGCTATTTGGAACGAGTTGATGCTATTATCAAGTGTCAAGGCCTTCTTATGACATCCGGACGAATGgtctttgccctttcttcttttcacttttgttttgcttttggacttgccgtgtaacccttttataatttag

Basic information

species Glycine max
transcript GLYMA01G43650.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G43650.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv06s0061g00040.t01 (Vitis vinifera), 5'ss of exon 5
TGCAGCAATTATAATTGGTACTGGTACAAATGCCTGCTATTTGGAACGAGTTGATGCTATTATCAAGTGTCAAGGCCTTCTTATGACATCCGGACGAATGgtctttgccctt--tcttcttttca--------cttttgttttgcttttggacttgccgtgtaacccttttataatttag-----------------------------
||| ||| | |||||||| || ||||||||||||||||||||||||||    ||||||||||| |||||||| ||||||||||  || || ||| | ||||| |     |||  | ||||  |||        ||     |    |||||    |   |  | |  ||| |||   |||                              
TGCTGCAGTGATAATTGGGACAGGTACAAATGCCTGCTATTTGGAACGGACAGATGCTATTATTAAGTGTCAGGGCCTTCTTACAACTTCTGGAGGCATGgtatcctttcttgattttctagtcatacattacctaacactgcatttttgagaataaagactgattcttctatttattatttgacttcatgtcatcttccattcgttag