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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCAAACAATCTCATGCCATTTGTTCAGCAAGTAGCAGTTGGCCGACGGCCTGCACTGACAGTTTTTGGAAATGATTATAATACAAGTGATGGCACTGGGgtacgctctaactgacttaaatttatgcactgaaatttttccatggaaaagaaaattgcatgaagttttatccaatcttatcatgtccactgtttccttg...

Basic information

species Glycine max
transcript GLYMA01G43540.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G43540.2 (Glycine max), 5'ss of exon 5
lower sequence: Vv02s0025g01560.t01 (Vitis vinifera), 5'ss of exon 5
TCCAAACAATCTCATGCCATTTGTTCAGCAAGTAGCAGTTGGCCGACGGCCTGCACTGACAGTTTTTGGAAATGATTATAATACAAGTGATGGCACTGGGgtacgctcta-actgacttaaatttatgcactgaaatttttccatggaaaagaaaattgcatgaagttttatccaatcttatcatgtccactgtttccttg
 |||||||| || ||||| ||||| |||||||| || |||||| | || |||||||| ||||||||||||| ||| |||   ||||  ||||| ||||||||| | | |  | ||    ||| |||  |  |  || || | | ||           |   |    | || |   || | |   ||     |  || | | 
CCCAAACAACCTTATGCCCTTTGTGCAGCAAGTTGCTGTTGGCAGGCGACCTGCACTTACAGTTTTTGGAAGTGACTATTCAACAAAGGATGGTACTGGGgtatgttttccattgttagaaagttactctattcaacttctacttgtttgttggctgtttttagtctgtttttagatgtcacattgatatataattgcat-

upper sequence: GLYMA01G43540.2 (Glycine max), 5'ss of exon 5
lower sequence: Vv02s0025g01580.t01 (Vitis vinifera), 5'ss of exon 5
TCCAAACAATCTCATGCCATTTGTTCAGCAAGTAGCAGTTGGCCGACGGCCTGCACTGACAGTTTTTGGAAATGATTATAATACAAGTGATGGCACTGGGgtacgctcta-actgacttaaatttatgcactgaaatttttccatggaaaagaaaattgcatgaagtt--ttatccaatcttatcatgtccactgtttccttg
 |||||||| || ||||| ||||| |||||||| || |||||| | || |||||||| ||||||||||||| ||| |||   ||||  ||||| || |||||| | | |  | || |   |  ||| |   |  |  | ||   |       |    ||  |  | ||  ||||  | |   ||  |||  ||| ||   |  
CCCAAACAACCTTATGCCCTTTGTGCAGCAAGTTGCTGTTGGCAGGCGACCTGCACTTACAGTTTTTGGAAGTGACTATTCAACAAAGGATGGTACCGGGgtatgttttgcattgtcagcatattacgttattcatctctttggttatttgcatgtgtgtctagatttgcttatgtagtaa-atattgtgaactattaaat--

upper sequence: GLYMA01G43540.2 (Glycine max), 5'ss of exon 5
lower sequence: EFJ35039 (Selaginella moellendorffii), 5'ss of exon 5
TCCAAACAATCTCATGCCATTTGTTCAGCAAGTAGCAGTTGGCCGACGGCCTGCACTGACAGTTTTTGGAAATGATTATAATACAAGTGATGGCACTGGGgtacgctctaactgacttaaatttatgcactgaaatttttccatggaaaagaaaattgcatgaagttttatccaatcttatcatgtccactgtttccttg
 ||||||||||| ||||| |||||||| ||||||||||| ||  || | || |  |||||||| ||||| || || ||    || || || || || ||||| |  ||| | ||  ||   ||    || |    || ||   || | |   ||    ||||   | ||| |   ||| |                    
CCCAAACAATCTGATGCCGTTTGTTCAACAAGTAGCAGTCGGAAGAAGACCCGAGCTGACAGTGTTTGGGAACGACTACCCAACGAGAGACGGAACAGGGgt-cagtctcaatgcttttttttatcacatt----ttattttctgtacattgaatgctcatggtttcttacc---tctgacggcag--------------

upper sequence: GLYMA01G43540.2 (Glycine max), 5'ss of exon 5
lower sequence: EFJ17435 (Selaginella moellendorffii), 5'ss of exon 5
TCCAAACAATCTCATGCCATTTGTTCAGCAAGTAGCAGTTGGCCGACGGCCTGCACTGACAGTTTTTGGAAATGATTATAATACAAGTGATGGCACTGGGgtacgctctaactgacttaaatttatgcactgaaatttttccatggaaaagaaaattgcatgaagttttatccaatcttatcatgtccactgtttccttg
 ||||||||||| ||||| |||||||| ||||||||||| ||  || | || |  |||||||| ||||| || || ||    || || || || || |||||  |    ||   | ||   ||||| |||  |  || ||   || | |   ||    ||||   | ||| |   ||| |                    
CCCAAACAATCTGATGCCGTTTGTTCAACAAGTAGCAGTCGGAAGAAGACCCGAGCTGACAGTGTTTGGGAACGACTACCCAACGAGAGACGGAACAGGGgtcagtctcaatgcattt---tttat-cac--attttattttctgtacattgaatgctcatggtttcttacc---tctgacggcag--------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209713128|gb|BW653837.1|BW653837
EST:     CTGCACTGACAGTTTTTGGAAATGATTATAATACAAGTGATGGCACTGGG                         GTTCGGGATTACATTCATGTTGTTGATTTAGCAGATGGGCACATTGCTGCA
genomic: CTGCACTGACAGTTTTTGGAAATGATTATAATACAAGTGATGGCACTGGGgtacgctcta ... tttttgtcagGTTCGGGATTACATTCATGTTGTTGATTTAGCAGATGGGCACATTGCTGCA
EST: gi|16349370|gb|BI974965.1|BI974965
EST:     CTGCACTGACAGTTTTTGGAAATGATTATAATACAAGTGATGGCACTGGG                         GTTCGGGATTACATTCATGTTGTTGATTTAGCAGATGGGCACATTGCTGCA
genomic: CTGCACTGACAGTTTTTGGAAATGATTATAATACAAGTGATGGCACTGGGgtacgctcta ... tttttgtcagGTTCGGGATTACATTCATGTTGTTGATTTAGCAGATGGGCACATTGCTGCA
EST: gi|12489618|gb|BG043139.1|BG043139
EST:     CTGCACTGACAGTTTTTGGAAATGATTATAATACAAGTGATGGCACTGGG                         GTTCGGGATTACATTCATGTTGTTGATTTATCAGATGGGCACATTGCTGCA
genomic: CTGCACTGACAGTTTTTGGAAATGATTATAATACAAGTGATGGCACTGGGgtacgctcta ... tttttgtcagGTTCGGGATTACATTCATGTTGTTGATTTAGCAGATGGGCACATTGCTGCA