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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCAAAATTGAAATCCGTCTTGCAAAAGCTGAAGCTATTAATTGGACATCTCTGGAATATGGCAAGAATACACTTCCCCCAATAATAAATAGGCCGATAGgtgagatgactatttatttagtttatcctttttgtgattctgttaggatccaattgcaaggtatgggacttgagtccgatgctggaagtgtgagattata...

Basic information

species Glycine max
transcript GLYMA01G43150.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193409887|gb|FK371287.1|FK371287
EST:     TCTGGAATATGGCAAGAATACACTTCCCCCAATAATAAATAGGCCGATAG                         TTCAATCTGAAAGGGCTTCATACCCATCACCAAAACCAAGGACAAAAGATT
genomic: TCTGGAATATGGCAAGAATACACTTCCCCCAATAATAAATAGGCCGATAGgtgagatgac ... atctatgcagTTCAATCTGAAAGGGCTTCATACCCATCACCAAAACCAAGGACAAAAGATT
EST: gi|207794124|gb|GD765344.1|GD765344
EST:     TCTGGAATATGGCAAGAATACACTTCCCCCAATAATAAATAGGCCGATAG                         TTCAATCTGAAAGGGCTTCATACCCATCACCAAAACCAAGGACAAAAGATT
genomic: TCTGGAATATGGCAAGAATACACTTCCCCCAATAATAAATAGGCCGATAGgtgagatgac ... atctatgcagTTCAATCTGAAAGGGCTTCATACCCATCACCAAAACCAAGGACAAAAGATT
EST: gi|208205528|gb|GE004973.1|GE004973
EST:     CTGGAATATGGCAAGAATACACTTCCCCCCAATAATAAATAGGCCGATAG                         TTCAATCTGAAAGGGCTT
genomic: CTGGAATATGGCAAGAATACACTTCCCCC-AATAATAAATAGGCCGATAGgtgagatgac ... atctatgcagTTCAATCTGAAAGGGCTT
EST: gi|193611222|gb|FK563048.1|FK563048
EST:     TATGGCAAGAATACACTTCCCCCAATAATAAATAGGCCGATAG                         TTCAATCTGAAAGGGCTTCATACCCATCACCAAA-CCAAGGACAAA-GATT
genomic: TATGGCAAGAATACACTTCCCCCAATAATAAATAGGCCGATAGgtgagatgac ... atctatgcagTTCAATCTGAAAGGGCTTCATACCCATCACCAAAACCAAGGACAAAAGATT
EST: gi|208055273|gb|GD854956.1|GD854956
EST:     ATACACTTCCCCCAATAATAAATAGGCCGATAG                         TTCAATCTGAAAGGGCTTCATACCCATCACCAAAACCAAGGACAAAAGATT
genomic: ATACACTTCCCCCAATAATAAATAGGCCGATAGgtgagatgac ... atctatgcagTTCAATCTGAAAGGGCTTCATACCCATCACCAAAACCAAGGACAAAAGATT
EST: gi|208083734|gb|GD881710.1|GD881710
EST:     CTGGAATATGGTCAAGAATACACTTCCCCCAATAATAAATAGGCCGATAG                         TTCAATCTGAAAGGGCTTCATACCCATCACCAAAACCAAGGACAAAAAGAT
genomic: CTGGAATATGG-CAAGAATACACTTCCCCCAATAATAAATAGGCCGATAGgtgagatgac ... atctatgcagTTCAATCTGAAAGGGCTTCATACCCATCACCAAAACCAAGGACAAAA-GAT
EST: gi|208088682|gb|GD885258.1|GD885258
EST:     TCTGGAATATGGCAAGAATACACTTCCCCCAATAATAAATAGGCCGATAG                         TTCAATCTGAAAGGGCTTCATACCCATCACCAAAACCAAGGACAAAAGATT
genomic: TCTGGAATATGGCAAGAATACACTTCCCCCAATAATAAATAGGCCGATAGgtgagatgac ... atctatgcagTTCAATCTGAAAGGGCTTCATACCCATCACCAAAACCAAGGACAAAAGATT
EST: gi|193387526|gb|FK350899.1|FK350899
EST:     TCTGGAATATGGCAAGAATACACTTCCCCCAATAATAAATAGGCCGATAG                         TTCAATCTGAAAGGGCTTCATACCCATCACCAAAACCAAGGACAAAAGATT
genomic: TCTGGAATATGGCAAGAATACACTTCCCCCAATAATAAATAGGCCGATAGgtgagatgac ... atctatgcagTTCAATCTGAAAGGGCTTCATACCCATCACCAAAACCAAGGACAAAAGATT
EST: gi|254317701|gb|GR826685.1|GR826685
EST:     TCTGGAATATGGCAAGAATACACTTCCCCCAATAATAAATAGGCCGATAG                         TTCAATCTGAAAGGGCTTCATACCCATCACCAAAACCAAGGACAAAAGATT
genomic: TCTGGAATATGGCAAGAATACACTTCCCCCAATAATAAATAGGCCGATAGgtgagatgac ... atctatgcagTTCAATCTGAAAGGGCTTCATACCCATCACCAAAACCAAGGACAAAAGATT
EST: gi|208252523|gb|GE048327.1|GE048327
EST:     AAATAGGCCGATAG                         TTCAATCTGAAAGGGCTTCATACCCATCACCAAAACCAAGGACAAAAGATT
genomic: AAATAGGCCGATAGgtgagatgac ... atctatgcagTTCAATCTGAAAGGGCTTCATACCCATCACCAAAACCAAGGACAAAAGATT
EST: gi|193557917|gb|FK513700.1|FK513700
EST:     CTAGGAATATGGCAAGAATACACTTCCCCCAATAATAAATAGGCCGATAG                         TTCAATCTGGAAGGGCTTCATACCCATCACCAAAACCAA
genomic: CT-GGAATATGGCAAGAATACACTTCCCCCAATAATAAATAGGCCGATAGgtgagatgac ... atctatgcagTTCAATCTGAAAGGGCTTCATACCCATCACCAAAACCAA
EST: gi|208311647|gb|GE102653.1|GE102653
EST:     TCTGGAATATGGCAAGAATACACTTCCCCCAATAATAAATAGGCCGATAG                         TTCAATCTGAAAGGGCTTCATACCCATCACCAAAACCAAGGACAAAAGATT
genomic: TCTGGAATATGGCAAGAATACACTTCCCCCAATAATAAATAGGCCGATAGgtgagatgac ... atctatgcagTTCAATCTGAAAGGGCTTCATACCCATCACCAAAACCAAGGACAAAAGATT
EST: gi|193714495|gb|FK655066.1|FK655066
EST:     TCTGGAATATGGCAAGAATACACTTCCCC-AATAATAAATAGGCCGATAG                         TTCAATCTGGAAGGGCTTCATACCCATCACCAAAACCAA
genomic: TCTGGAATATGGCAAGAATACACTTCCCCCAATAATAAATAGGCCGATAGgtgagatgac ... atctatgcagTTCAATCTGAAAGGGCTTCATACCCATCACCAAAACCAA
EST: gi|193346693|gb|FK312145.1|FK312145
EST:     CTGGAATATGGCAAGAATAACACTTCCCCCAATAATAAATAGGCCGATAG                         TTCAATCTGAAAGGGCTTCATACCCA
genomic: CTGGAATATGGCAAGAATA-CACTTCCCCCAATAATAAATAGGCCGATAGgtgagatgac ... atctatgcagTTCAATCTGAAAGGGCTTCATACCCA
EST: gi|193387112|gb|FK352935.1|FK352935
EST:     TCTGGAATATGGCAAGAATACACTTCCCCCAATAATAAATAGGCCGATAG                         TTCAATCTGAAAGGG
genomic: TCTGGAATATGGCAAGAATACACTTCCCCCAATAATAAATAGGCCGATAGgtgagatgac ... atctatgcagTTCAATCTGAAAGGG
EST: gi|16343086|gb|BI968681.1|BI968681
EST:     TCTGGAATATGGCAAGAATACACTTCCCCCAATAATAAATAGGCCGATAG                         TTCAATCTGAAAGGGCTTCATACCCATCACCAAAACCAAGGACAAAAGATT
genomic: TCTGGAATATGGCAAGAATACACTTCCCCCAATAATAAATAGGCCGATAGgtgagatgac ... atctatgcagTTCAATCTGAAAGGGCTTCATACCCATCACCAAAACCAAGGACAAAAGATT
EST: gi|207694117|gb|GD674240.1|GD674240
EST:     TCTGGAATATGGCAAGAATACACTTCCCCCAATAATAAATAGGCCGATAG                         TTCAATCTGAAAGGGCTTCATACCCATCACCAAAACCAAGGACAAAAGAAT
genomic: TCTGGAATATGGCAAGAATACACTTCCCCCAATAATAAATAGGCCGATAGgtgagatgac ... atctatgcagTTCAATCTGAAAGGGCTTCATACCCATCACCAAAACCAAGGACAAAAGA-T
EST: gi|22933326|gb|BU550465.1|BU550465
EST:     TCTGGAATATGNNAAGAATACACTTCCCCCAATAATAAATAGGCCGATAG                         TTCAATCTGAAAGGGCTTCATACCCATNNNCAAAACCAAGGACAAAAGATT
genomic: TCTGGAATATGGCAAGAATACACTTCCCCCAATAATAAATAGGCCGATAGgtgagatgac ... atctatgcagTTCAATCTGAAAGGGCTTCATACCCATCACCAAAACCAAGGACAAAAGATT
EST: gi|193574220|gb|FK528865.1|FK528865
EST:     TCTGGAATATGGCAAGAATACACTTCCCCCAATAATAAATAGGCCGATAG                         TTCAACCTGAAAGGGCTTCATACCCATCACCAAAAC-AAGGACAAA-GAT-
genomic: TCTGGAATATGGCAAGAATACACTTCCCCCAATAATAAATAGGCCGATAGgtgagatgac ... atctatgcagTTCAATCTGAAAGGGCTTCATACCCATCACCAAAACCAAGGACAAAAGATT
EST: gi|208338786|gb|GE139220.1|GE139220
EST:     CAAGAATACACTTCCCCCAATAAT-AATA-GCCGATAG                         TTCAATCTGAAAGGGCTTCATACCCATCACCAAAACCAAGGACAAAAGATT
genomic: CAAGAATACACTTCCCCCAATAATAAATAGGCCGATAGgtgagatgac ... atctatgcagTTCAATCTGAAAGGGCTTCATACCCATCACCAAAACCAAGGACAAAAGATT
EST: gi|208061229|gb|GD860413.1|GD860413
EST:     TCTGGAATATGGCAAGAATACACTTCCCCCAATAATAAATAGGCCGATAG                         TTCAATCTGAAAGGGCTTCATA
genomic: TCTGGAATATGGCAAGAATACACTTCCCCCAATAATAAATAGGCCGATAGgtgagatgac ... atctatgcagTTCAATCTGAAAGGGCTTCATA
EST: gi|193358620|gb|FK326660.1|FK326660
EST:     CTGGAATATGGTCAAGAATACACTTCCCCCAATAATAAATAGGCCGATAG                         TTCAATCTGAAAGGGCTTCATACCCATCACCAAAACCAAGGACAAAAGATT
genomic: CTGGAATATGG-CAAGAATACACTTCCCCCAATAATAAATAGGCCGATAGgtgagatgac ... atctatgcagTTCAATCTGAAAGGGCTTCATACCCATCACCAAAACCAAGGACAAAAGATT
EST: gi|208256603|gb|GE054058.1|GE054058
EST:     TAATAAATAGGCCGATAG                         TTCAATCTGAAAGGGCTTCATACCCATCACCAAAACCAAGGACAAAAGATT
genomic: TAATAAATAGGCCGATAGgtgagatgac ... atctatgcagTTCAATCTGAAAGGGCTTCATACCCATCACCAAAACCAAGGACAAAAGATT
EST: gi|193346107|gb|FK310859.1|FK310859
EST:     TCTGGAATATGGCAAGAATACACTTCCCCCAATAATAAATAGGCCGATAG                         TTCAATCTGAAAGG-CTTC
genomic: TCTGGAATATGGCAAGAATACACTTCCCCCAATAATAAATAGGCCGATAGgtgagatgac ... atctatgcagTTCAATCTGAAAGGGCTTC
EST: gi|208259580|gb|GE058000.1|GE058000
EST:     TCTGGAATATGGCAAGAATACACTTCCCCCAATAATAAATAGGCCGATAG                         TTCAATCTGAAAGGGCTTCATACCCATCACCAAAACCAAGGACAAAAGATT
genomic: TCTGGAATATGGCAAGAATACACTTCCCCCAATAATAAATAGGCCGATAGgtgagatgac ... atctatgcagTTCAATCTGAAAGGGCTTCATACCCATCACCAAAACCAAGGACAAAAGATT
EST: gi|208163592|gb|GD961426.1|GD961426
EST:     TCTGGAATATGGCAAGAATACACTTCCCCCAATAATAAATAGGCCGATAG                         TTCAATCTGAAAGGGCTT
genomic: TCTGGAATATGGCAAGAATACACTTCCCCCAATAATAAATAGGCCGATAGgtgagatgac ... atctatgcagTTCAATCTGAAAGGGCTT
EST: gi|208060790|gb|GD857146.1|GD857146
EST:     TGGAATATGGCAAGAATACACTTCCCCCAACTAATAAATAAGGCCGATAG                         TTCAATCTGAAAGGGCTTCATACCCATCACCAAAACCAAGGACAAAAGATT
genomic: TGGAATATGGCAAGAATACACTTCCCCCAA-TAATAAATA-GGCCGATAGgtgagatgac ... atctatgcagTTCAATCTGAAAGGGCTTCATACCCATCACCAAAACCAAGGACAAAAGATT
EST: gi|208287588|gb|GE081724.1|GE081724
EST:     TCTGGAATATGGCAAGAATACACTTCCCCCAATAATAAATAGGCCGATAG                         TTCAATCTGAAAGGGCTTCATACCCATCACCAAAACCAAGGACAAAAGATT
genomic: TCTGGAATATGGCAAGAATACACTTCCCCCAATAATAAATAGGCCGATAGgtgagatgac ... atctatgcagTTCAATCTGAAAGGGCTTCATACCCATCACCAAAACCAAGGACAAAAGATT
EST: gi|208335344|gb|GE136355.1|GE136355
EST:     TCTGGAATATGGCAAGAATACACTTCCCCCAATAATAAATAGGCCGATAG                         TTCAATCTGAAAGGGCTTCATACCCATCACCAAAACCAAGGACAAAAGATT
genomic: TCTGGAATATGGCAAGAATACACTTCCCCCAATAATAAATAGGCCGATAGgtgagatgac ... atctatgcagTTCAATCTGAAAGGGCTTCATACCCATCACCAAAACCAAGGACAAAAGATT
EST: gi|33389087|gb|CA852294.1|CA852294
EST:     TCTGGAATATGGCAAGAATACACTTCCCCCAATAATAAATAGGCCGATAG                         TTCAATCTGAAAGGGCTTCATACCCATCACCAAAACCAAGGACAAAAGATT
genomic: TCTGGAATATGGCAAGAATACACTTCCCCCAATAATAAATAGGCCGATAGgtgagatgac ... atctatgcagTTCAATCTGAAAGGGCTTCATACCCATCACCAAAACCAAGGACAAAAGATT
EST: gi|254317168|gb|GR826113.1|GR826113
EST:     TCTGGAATATGGCAAGAATACACTTCCCCCAATAATAAATAGGCCGATAG                         TTCAATCTGAAAGGGCTTCATACCCATCACCAAAACCAAGGACAAAAGATT
genomic: TCTGGAATATGGCAAGAATACACTTCCCCCAATAATAAATAGGCCGATAGgtgagatgac ... atctatgcagTTCAATCTGAAAGGGCTTCATACCCATCACCAAAACCAAGGACAAAAGATT
EST: gi|207735667|gb|GD713030.1|GD713030
EST:     TCTGGAATATGGCAAGAATACACTTCCCCCAATAATAAATAGGCCGATAG                         TTCAATCTGAAAGGGCTTCGTACCCATCACCAAAACCAAGGACAAAAGATT
genomic: TCTGGAATATGGCAAGAATACACTTCCCCCAATAATAAATAGGCCGATAGgtgagatgac ... atctatgcagTTCAATCTGAAAGGGCTTCATACCCATCACCAAAACCAAGGACAAAAGATT
EST: gi|208069055|gb|GD863797.1|GD863797
EST:     TCTGGAATATGGCAAGAATACACTTCCCCCAATAATAAATAGGCCGATAG                         TTCAATCTGAAAGGGCTTCATACCCATCACCAAAACCAAGGACAAAAGATT
genomic: TCTGGAATATGGCAAGAATACACTTCCCCCAATAATAAATAGGCCGATAGgtgagatgac ... atctatgcagTTCAATCTGAAAGGGCTTCATACCCATCACCAAAACCAAGGACAAAAGATT
EST: gi|207798504|gb|GD769589.1|GD769589
EST:     TCTGGAATATGGCAAGAATACACTTCCCCCAATAATAAATAGGCCGATAG                         TTCAATCTGAAAGGGCTTCATACCCATCACCAAAACCAAGGACAAAAGATT
genomic: TCTGGAATATGGCAAGAATACACTTCCCCCAATAATAAATAGGCCGATAGgtgagatgac ... atctatgcagTTCAATCTGAAAGGGCTTCATACCCATCACCAAAACCAAGGACAAAAGATT
EST: gi|208269415|gb|GE070339.1|GE070339
EST:     TCTGGAATATGGCAAGAATACACTTCCCCCAATAATAAATAGGCCGATAG                         TTCAATCTGAAAGGGCTTCATACCCATCACCAAAACCAAGGACAAAAGATT
genomic: TCTGGAATATGGCAAGAATACACTTCCCCCAATAATAAATAGGCCGATAGgtgagatgac ... atctatgcagTTCAATCTGAAAGGGCTTCATACCCATCACCAAAACCAAGGACAAAAGATT
EST: gi|193453649|gb|FK421105.1|FK421105
EST:     TCTGGAATATGGCAAGAATACACTTCCCCCAATAATAAATAGGCCGATAG                         TTCAATCTGAAAGGGCTTCATACCCATCACCAAAACCAAGGACAAAAGATT
genomic: TCTGGAATATGGCAAGAATACACTTCCCCCAATAATAAATAGGCCGATAGgtgagatgac ... atctatgcagTTCAATCTGAAAGGGCTTCATACCCATCACCAAAACCAAGGACAAAAGATT
EST: gi|193418032|gb|FK382618.1|FK382618
EST:     TCTGGAATATGGCAAGAATACACTTCCCCCAATAATAAATAGGCCGATAG                         TTCAATCTGAAAGGGCTTCATACCCATCA
genomic: TCTGGAATATGGCAAGAATACACTTCCCCCAATAATAAATAGGCCGATAGgtgagatgac ... atctatgcagTTCAATCTGAAAGGGCTTCATACCCATCA
EST: gi|207713719|gb|GD694834.1|GD694834
EST:     TGGAATATGGCAAGAATACACTTCCCCCAACTAATAAATAAGGCCGATAG                         TTCAATCTGAAAGGGCTTCATACCCATCACCAAAACC
genomic: TGGAATATGGCAAGAATACACTTCCCCCAA-TAATAAATA-GGCCGATAGgtgagatgac ... atctatgcagTTCAATCTGAAAGGGCTTCATACCCATCACCAAAACC
EST: gi|208321295|gb|GE125480.1|GE125480
EST:     TCTGGAATATGGCAAGAATACACTTCCCCCAATAATAAATAGGCCGATAG                         TTCAATCTGAAAGGGCTTCATA
genomic: TCTGGAATATGGCAAGAATACACTTCCCCCAATAATAAATAGGCCGATAGgtgagatgac ... atctatgcagTTCAATCTGAAAGGGCTTCATA
EST: gi|193362771|gb|FK327429.1|FK327429
EST:     GCAAGAATACACTTCCCCCAATAATAAATAGGCCGATAG                         TTCAATCTGAAAGGGCTTCATACCCATCACCAAAACCAAGGACAAAAGATT
genomic: GCAAGAATACACTTCCCCCAATAATAAATAGGCCGATAGgtgagatgac ... atctatgcagTTCAATCTGAAAGGGCTTCATACCCATCACCAAAACCAAGGACAAAAGATT
EST: gi|193604260|gb|FK558889.1|FK558889
EST:     TCTGGAATATGGCAAGAATACACTTCCCCCAATAATAAATAGGCCGATAG                         TTCAATCTGAAAGGGCTTCATACCCATCACCAAAACCAAGGACAAAAGATT
genomic: TCTGGAATATGGCAAGAATACACTTCCCCCAATAATAAATAGGCCGATAGgtgagatgac ... atctatgcagTTCAATCTGAAAGGGCTTCATACCCATCACCAAAACCAAGGACAAAAGATT
EST: gi|5342531|gb|AI794815.1|AI794815
EST:     TCTGGAATATGGCAAGAATACACTTCCCCCAATAATAAATAGGCCGATAG                         TTCAATCTGAAAGGGCTTCATACCCATCACCAAAACCAAGGACAAAAGATT
genomic: TCTGGAATATGGCAAGAATACACTTCCCCCAATAATAAATAGGCCGATAGgtgagatgac ... atctatgcagTTCAATCTGAAAGGGCTTCATACCCATCACCAAAACCAAGGACAAAAGATT
EST: gi|193462682|gb|FK428175.1|FK428175
EST:     TCTGGAATATGGCAAGAATACACTTCCCCCAATAATAAATAGGCCGATAG                         TTCAATCTGAAAGGGCTTCATACCCATCACCAAAACCAAGGACAAAAGATT
genomic: TCTGGAATATGGCAAGAATACACTTCCCCCAATAATAAATAGGCCGATAGgtgagatgac ... atctatgcagTTCAATCTGAAAGGGCTTCATACCCATCACCAAAACCAAGGACAAAAGATT
EST: gi|193682350|gb|FK624148.1|FK624148
EST:     TCTGGAATATGGCAAGAATACACTTCCCCCAATAATAAATAGGCCGATAG                         TTCAATCTGAAAGGGCTTCATACCCATCACCAAAACCAAGGACAAA-GATT
genomic: TCTGGAATATGGCAAGAATACACTTCCCCCAATAATAAATAGGCCGATAGgtgagatgac ... atctatgcagTTCAATCTGAAAGGGCTTCATACCCATCACCAAAACCAAGGACAAAAGATT
EST: gi|193550410|gb|FK506789.1|FK506789
EST:     TCTGGAATATGGCAAGAATACACTTTCCCCAATAATAAATAGGCCGATAG                         TTCAATCTGAAAGGGCTTCATACCCATCACCAAAACCAAGGACAAAAGATT
genomic: TCTGGAATATGGCAAGAATACACTTCCCCCAATAATAAATAGGCCGATAGgtgagatgac ... atctatgcagTTCAATCTGAAAGGGCTTCATACCCATCACCAAAACCAAGGACAAAAGATT
EST: gi|6724926|gb|AW309325.1|AW309325
EST:     TCTGGAATATGGCAAGAATACACTTCCCCCAATAATAAATAGGCCGATAG                         TTCAATCTGAAAGGGCTTCATACCCATCACCAAAACCAAGGACAAAAGATT
genomic: TCTGGAATATGGCAAGAATACACTTCCCCCAATAATAAATAGGCCGATAGgtgagatgac ... atctatgcagTTCAATCTGAAAGGGCTTCATACCCATCACCAAAACCAAGGACAAAAGATT
EST: gi|193553193|gb|FK509928.1|FK509928
EST:     TCTGGAATATGGCAAGAATACACTTCCCCCAATAATAAATAGGCCGATAG                         TTCAATCTGAAAGGGCTTCATACCCATCACCAAAACCAAGGACAAAAGATT
genomic: TCTGGAATATGGCAAGAATACACTTCCCCCAATAATAAATAGGCCGATAGgtgagatgac ... atctatgcagTTCAATCTGAAAGGGCTTCATACCCATCACCAAAACCAAGGACAAAAGATT
EST: gi|193633276|gb|FK582848.1|FK582848
EST:     TCTGGAATATGGCAAGAATACACTTCCCCCAATAATAAATAGGCCGATAG                         TTCAATCTGAAAGGGCTTCATACCCATCA
genomic: TCTGGAATATGGCAAGAATACACTTCCCCCAATAATAAATAGGCCGATAGgtgagatgac ... atctatgcagTTCAATCTGAAAGGGCTTCATACCCATCA
EST: gi|193386161|gb|FK351649.1|FK351649
EST:     CTGGAATATGGCAAGAATACACTTCCCCCAATAATAAAATAGGCCGATAG                         TTCAATCTGAAAGGGCTTCATACCCATCACCAAAACCAAGGACAAAAGATT
genomic: CTGGAATATGGCAAGAATACACTTCCCCCAATAAT-AAATAGGCCGATAGgtgagatgac ... atctatgcagTTCAATCTGAAAGGGCTTCATACCCATCACCAAAACCAAGGACAAAAGATT
EST: gi|254317160|gb|GR826105.1|GR826105
EST:     TCTGGAATATGGCAAGAATACACTTCCCCCAATAATAAATAGGCCGATAG                         TTCAATCTGAAAGGGCTTCATACCCATCACCAAAACCAAGGACAAAAGATT
genomic: TCTGGAATATGGCAAGAATACACTTCCCCCAATAATAAATAGGCCGATAGgtgagatgac ... atctatgcagTTCAATCTGAAAGGGCTTCATACCCATCACCAAAACCAAGGACAAAAGATT
EST: gi|193653853|gb|FK598311.1|FK598311
EST:     AATAATAAATAGGCCGATAG                         TTCAATCTGAAAGGGCTTCATACCCATCACCAAAACCACGGACAAAAGATT
genomic: AATAATAAATAGGCCGATAGgtgagatgac ... atctatgcagTTCAATCTGAAAGGGCTTCATACCCATCACCAAAACCAAGGACAAAAGATT
EST: gi|208047336|gb|GD844433.1|GD844433
EST:     TCTGGAATATGGCAAGAATACACTTCCCCCAATAATAAATAGGCCGATAG                         TTCAATCTGAAAGGGCTTCATACCCATCACCAAAACCAAGGACAAAAGATT
genomic: TCTGGAATATGGCAAGAATACACTTCCCCCAATAATAAATAGGCCGATAGgtgagatgac ... atctatgcagTTCAATCTGAAAGGGCTTCATACCCATCACCAAAACCAAGGACAAAAGATT
EST: gi|207826385|gb|GD799468.1|GD799468
EST:     TCTGGAATATGGCAAGAATACACTTCCCCCAATAATAAATAGGCCGATAG                         TTCAGTCTGAAAGGGCTTCATACCCATCACCAAAACCAAGGACAAAAGATT
genomic: TCTGGAATATGGCAAGAATACACTTCCCCCAATAATAAATAGGCCGATAGgtgagatgac ... atctatgcagTTCAATCTGAAAGGGCTTCATACCCATCACCAAAACCAAGGACAAAAGATT
EST: gi|14125278|gb|BG789716.1|BG789716
EST:     ACTTCCCCCAATAATAAATAGGCCGATAG                         TTCAATCTGAAAGGGCTTCATACCCATCACCAAAACCAAGGACAAAAGATT
genomic: ACTTCCCCCAATAATAAATAGGCCGATAGgtgagatgac ... atctatgcagTTCAATCTGAAAGGGCTTCATACCCATCACCAAAACCAAGGACAAAAGATT
EST: gi|193454558|gb|FK420411.1|FK420411
EST:     TCTGGAATATGGCAAGAATACACTTCCCCCAATAATAAATAGGCCGATAG                         TTCAATCTGAAAGGGCTTCATACCCATCACCAAAACCA-GGACAAAAGATT
genomic: TCTGGAATATGGCAAGAATACACTTCCCCCAATAATAAATAGGCCGATAGgtgagatgac ... atctatgcagTTCAATCTGAAAGGGCTTCATACCCATCACCAAAACCAAGGACAAAAGATT
EST: gi|193368227|gb|FK330043.1|FK330043
EST:     GAATATGGTCTAAGAATACACTTCCCCCAATAAATAAAATAGGCCGATAG                         TTCAATCTGAAAGGGCTTCATACCCATCACCAAAACCAAGGACAAAAGATT
genomic: GAATATGG-C-AAGAATACACTTCCCCCAAT-AAT-AAATAGGCCGATAGgtgagatgac ... atctatgcagTTCAATCTGAAAGGGCTTCATACCCATCACCAAAACCAAGGACAAAAGATT
EST: gi|193656195|gb|FK603297.1|FK603297
EST:     TCTGGAATATGGCAAGAATACACTTCCCCCAATAATAAATAGGCCGATAG                         TTCAATCTGAAAGGGCTTCATACCCATCACCAAAACCAAGGACAAAAGATT
genomic: TCTGGAATATGGCAAGAATACACTTCCCCCAATAATAAATAGGCCGATAGgtgagatgac ... atctatgcagTTCAATCTGAAAGGGCTTCATACCCATCACCAAAACCAAGGACAAAAGATT
EST: gi|208110534|gb|GD910464.1|GD910464
EST:     TCTGGAATATGGCAAGAATACACTTCCCCCAATAATAAATAGGCCGATAG                         TTCAATCTGAAAGGGCTTCATACCCATCACCAAAACCAAGGACAAAAGATT
genomic: TCTGGAATATGGCAAGAATACACTTCCCCCAATAATAAATAGGCCGATAGgtgagatgac ... atctatgcagTTCAATCTGAAAGGGCTTCATACCCATCACCAAAACCAAGGACAAAAGATT
EST: gi|193433149|gb|FK398755.1|FK398755
EST:     TCTGGAATATGGCAAGAATACACTTCCCCCAATAATAAATAGGCCGATAG                         TTCAATCTGAAAGGGCTTCATACCCATCACCAAAACCAAGGACAAAAGATT
genomic: TCTGGAATATGGCAAGAATACACTTCCCCCAATAATAAATAGGCCGATAGgtgagatgac ... atctatgcagTTCAATCTGAAAGGGCTTCATACCCATCACCAAAACCAAGGACAAAAGATT
EST: gi|193352356|gb|FK314330.1|FK314330
EST:     TCTGGAATATGGCAAGAATACACTTCCCCCAATAATAAATAGGCCGATAG                         TTCAATCTGAAAGGGCTTCATACCCATCACCAAAACCAAGGACAAAAGATT
genomic: TCTGGAATATGGCAAGAATACACTTCCCCCAATAATAAATAGGCCGATAGgtgagatgac ... atctatgcagTTCAATCTGAAAGGGCTTCATACCCATCACCAAAACCAAGGACAAAAGATT
EST: gi|208232845|gb|GE035370.1|GE035370
EST:     AATATGGCAAGAATACACTTCCCCCAATAATAAATAGGCCGATAG                         TTCAATCTGAAAGGGCTTCATACCCATCACCAAAACCAAGGACAAAAGATT
genomic: AATATGGCAAGAATACACTTCCCCCAATAATAAATAGGCCGATAGgtgagatgac ... atctatgcagTTCAATCTGAAAGGGCTTCATACCCATCACCAAAACCAAGGACAAAAGATT
EST: gi|208223974|gb|GE026129.1|GE026129
EST:     AATAATAAATAGGCCGATAG                         TTCAATCTGAAAGGGCTTCATACCCATCACCAAAACCAAGGACAAAAGATT
genomic: AATAATAAATAGGCCGATAGgtgagatgac ... atctatgcagTTCAATCTGAAAGGGCTTCATACCCATCACCAAAACCAAGGACAAAAGATT
EST: gi|208043703|gb|GD843165.1|GD843165
EST:     TCTGGAATATGGCAAGAATACACTTCCCCCAATAATAAATAGGCCGATAG                         TTCAATCTGAAAGGGCTTCATACCCATC
genomic: TCTGGAATATGGCAAGAATACACTTCCCCCAATAATAAATAGGCCGATAGgtgagatgac ... atctatgcagTTCAATCTGAAAGGGCTTCATACCCATC
EST: gi|207719420|gb|GD703431.1|GD703431
EST:     TCTGGAATATGGCAAGAATACACTTCCCCCAATAATAAATAGGCCGATAG                         TTCAATCTGAAAGGGCTTCATACCCATCACCAAAACCAAGGACAAAAGATT
genomic: TCTGGAATATGGCAAGAATACACTTCCCCCAATAATAAATAGGCCGATAGgtgagatgac ... atctatgcagTTCAATCTGAAAGGGCTTCATACCCATCACCAAAACCAAGGACAAAAGATT
EST: gi|207761757|gb|GD732868.1|GD732868
EST:     TCTGGAATATGGCAAGAATACACTTCCCCCAATAATAAATAGGCCGATAG                         TTCAATCTGAAAGGGCTTCATACCCATCACCAAAACCAAGGACAAAAGATT
genomic: TCTGGAATATGGCAAGAATACACTTCCCCCAATAATAAATAGGCCGATAGgtgagatgac ... atctatgcagTTCAATCTGAAAGGGCTTCATACCCATCACCAAAACCAAGGACAAAAGATT
EST: gi|209712068|gb|BW674215.1|BW674215
EST:     TTCCCCCAATAATAAATAGGCCGATAG                         TTCAATCTGAAAGGGCTTCATACCCATCACCAAAACCAAGGACAAAAGATT
genomic: TTCCCCCAATAATAAATAGGCCGATAGgtgagatgac ... atctatgcagTTCAATCTGAAAGGGCTTCATACCCATCACCAAAACCAAGGACAAAAGATT
EST: gi|193410174|gb|FK377085.1|FK377085
EST:     TCCGGAATATGGCAAGAATACCCTTCCCCCAATAATAAATAGGCCGATAG                         TTCAATCTGAAAGGGCTTCATACCCAT
genomic: TCTGGAATATGGCAAGAATACACTTCCCCCAATAATAAATAGGCCGATAGgtgagatgac ... atctatgcagTTCAATCTGAAAGGGCTTCATACCCAT
EST: gi|208326248|gb|GE120672.1|GE120672
EST:     TCTGGAATATGGCAAGAATACACTTCCCCCAATAATAAATAGGCCGATAG                         TTCAATCTGAAAGGGCTTCATACCCATCACCAAAACCAAGGACAAAAGATT
genomic: TCTGGAATATGGCAAGAATACACTTCCCCCAATAATAAATAGGCCGATAGgtgagatgac ... atctatgcagTTCAATCTGAAAGGGCTTCATACCCATCACCAAAACCAAGGACAAAAGATT
EST: gi|208043271|gb|GD840549.1|GD840549
EST:     TCTGGAATATGGCAAGAATACACTTCCCCCAATAATAAATAGGCCGATAG                         TTCAATCTGAAAGGGCTTCATACCCATCACCAAAACCAAGGACAAAAGATT
genomic: TCTGGAATATGGCAAGAATACACTTCCCCCAATAATAAATAGGCCGATAGgtgagatgac ... atctatgcagTTCAATCTGAAAGGGCTTCATACCCATCACCAAAACCAAGGACAAAAGATT
EST: gi|208219519|gb|GE018825.1|GE018825
EST:     TCTGGAATATGGCAAGAATACA-TTCCCCCAATAATAAATAGGCCGATAG                         TTCAATCTGAAAGGGCTTCATACCCATCACCAAAACCAAGGACAAAAGATT
genomic: TCTGGAATATGGCAAGAATACACTTCCCCCAATAATAAATAGGCCGATAGgtgagatgac ... atctatgcagTTCAATCTGAAAGGGCTTCATACCCATCACCAAAACCAAGGACAAAAGATT
EST: gi|207784102|gb|GD758412.1|GD758412
EST:     TCTGGAATATGGCAAGAATACACTTCCCCCAATAATAAATAGGCCGATAG                         TTCAATCTGAAAGGGCTTCATACCCATCACCAAAACCAAGGACAAAAGATT
genomic: TCTGGAATATGGCAAGAATACACTTCCCCCAATAATAAATAGGCCGATAGgtgagatgac ... atctatgcagTTCAATCTGAAAGGGCTTCATACCCATCACCAAAACCAAGGACAAAAGATT
EST: gi|193495802|gb|FK458088.1|FK458088
EST:     TCTGGAATATGGCAAGAATACACTTCCCCCAATAATAAATAGGCCGATAG                         TTCAATCTGAAAGGGCTTCATA
genomic: TCTGGAATATGGCAAGAATACACTTCCCCCAATAATAAATAGGCCGATAGgtgagatgac ... atctatgcagTTCAATCTGAAAGGGCTTCATA
EST: gi|193304206|gb|FK271243.1|FK271243
EST:     CAATAATAAATAGGCCGATAG                         TTCAATCTGAAAGGGCTTCATACCCATCACCAAAACCAAGGACAAAAGATT
genomic: CAATAATAAATAGGCCGATAGgtgagatgac ... atctatgcagTTCAATCTGAAAGGGCTTCATACCCATCACCAAAACCAAGGACAAAAGATT
EST: gi|208172415|gb|GD966736.1|GD966736
EST:     TCTGGAATATGGCAAGAATACACTTCCCCCAATAATAAATAGGCCGATAG                         TTCAATCTGAAAGGGCTTCATACCCATCACCAAAACCAAGGACAAAAGATT
genomic: TCTGGAATATGGCAAGAATACACTTCCCCCAATAATAAATAGGCCGATAGgtgagatgac ... atctatgcagTTCAATCTGAAAGGGCTTCATACCCATCACCAAAACCAAGGACAAAAGATT
EST: gi|193694731|gb|FK627341.1|FK627341
EST:     TCTGGAATATGGCAAGAATACACTTCCCCCAATAATAAATAGGCCGATAG                         TTCAATCTGAAAGGGCTTCATACCCATCACCAAAACCAAGGACAAAAGATT
genomic: TCTGGAATATGGCAAGAATACACTTCCCCCAATAATAAATAGGCCGATAGgtgagatgac ... atctatgcagTTCAATCTGAAAGGGCTTCATACCCATCACCAAAACCAAGGACAAAAGATT
EST: gi|193680700|gb|FK624046.1|FK624046
EST:     TCTGGAATATGGCAAGAATACACTTCCCCCAATAATAAATAGGCCGATAG                         TTCAATCTGAAAGGGCTTCATACCCATCACCAAAACCAAGGACAAAAGATT
genomic: TCTGGAATATGGCAAGAATACACTTCCCCCAATAATAAATAGGCCGATAGgtgagatgac ... atctatgcagTTCAATCTGAAAGGGCTTCATACCCATCACCAAAACCAAGGACAAAAGATT
EST: gi|207784130|gb|GD758440.1|GD758440
EST:     TCTGGAATATGGCAAGAATACACTTCCCCCAATAATAAATAGGCCGATAG                         TTCAATCTGAAAGGGCTTCATACCCATCACCAAAACCAAGGACAAAAGATT
genomic: TCTGGAATATGGCAAGAATACACTTCCCCCAATAATAAATAGGCCGATAGgtgagatgac ... atctatgcagTTCAATCTGAAAGGGCTTCATACCCATCACCAAAACCAAGGACAAAAGATT
EST: gi|193586772|gb|FK543992.1|FK543992
EST:     TCTGGAATATGGCAAGAATACACTTCCCC-AATAATAAATAGGCCGATAG                         TTCAATCTGAAAGGGCTTCATACCCATCACCAAAACCAAGGACAAAAGATT
genomic: TCTGGAATATGGCAAGAATACACTTCCCCCAATAATAAATAGGCCGATAGgtgagatgac ... atctatgcagTTCAATCTGAAAGGGCTTCATACCCATCACCAAAACCAAGGACAAAAGATT
EST: gi|193449337|gb|FK412060.1|FK412060
EST:     TATGGCAAGAATACACTTCCCCCAATAATAAATAGGCCGATAG                         TTCAATCTGAAAGGGCTTCATACCCATCACCAAAACCAAGGACAAA-GATT
genomic: TATGGCAAGAATACACTTCCCCCAATAATAAATAGGCCGATAGgtgagatgac ... atctatgcagTTCAATCTGAAAGGGCTTCATACCCATCACCAAAACCAAGGACAAAAGATT
EST: gi|193464088|gb|FK426122.1|FK426122
EST:     TCTGGAATATGGCAAGAATACACTTCCCCCAATAATAAATAGGCCGATAG                         TTCAATCTGAAAGGGCTTCATACCCATCACCAAAACCAAGGACAAAAGATT
genomic: TCTGGAATATGGCAAGAATACACTTCCCCCAATAATAAATAGGCCGATAGgtgagatgac ... atctatgcagTTCAATCTGAAAGGGCTTCATACCCATCACCAAAACCAAGGACAAAAGATT
EST: gi|208224678|gb|GE026651.1|GE026651
EST:     TCTGGAATATGGCAAGAATACACTTCCCCCAATAATAAATAGGCCGATAG                         TTCAATCTGAAAGGGCTTCATACCCATCACCAAAACCAAGGACAAAAGAAT
genomic: TCTGGAATATGGCAAGAATACACTTCCCCCAATAATAAATAGGCCGATAGgtgagatgac ... atctatgcagTTCAATCTGAAAGGGCTTCATACCCATCACCAAAACCAAGGACAAAAGA-T
EST: gi|208242777|gb|GE039283.1|GE039283
EST:     TCTGGAATATGGCAAGAATACACTTCCCCCAATAATAAATAGGCCGATAG                         TTCAATCTGAAAGGGCTTCATACCCATCACCAAAACCAAGGACAAAAGAAT
genomic: TCTGGAATATGGCAAGAATACACTTCCCCCAATAATAAATAGGCCGATAGgtgagatgac ... atctatgcagTTCAATCTGAAAGGGCTTCATACCCATCACCAAAACCAAGGACAAAAGA-T
EST: gi|208289039|gb|GE085388.1|GE085388
EST:     TCTGGAATATGGCAAGAATACACTTCCCCCAATAATAAATAGGCCGATAG                         TTCAATCTGAAAGGGCTTCATACCCATCACCAAAACCAAGGACAAA-GATT
genomic: TCTGGAATATGGCAAGAATACACTTCCCCCAATAATAAATAGGCCGATAGgtgagatgac ... atctatgcagTTCAATCTGAAAGGGCTTCATACCCATCACCAAAACCAAGGACAAAAGATT
EST: gi|208094115|gb|GD893966.1|GD893966
EST:     TCTGGAATATGGCAAGAATACACTTCCCCCAATAATAAATAGGCCGATAG                         TTCAATCTGAAAGGGCTTCATACCCATCACCAAAACCAAGGACAAAAGATT
genomic: TCTGGAATATGGCAAGAATACACTTCCCCCAATAATAAATAGGCCGATAGgtgagatgac ... atctatgcagTTCAATCTGAAAGGGCTTCATACCCATCACCAAAACCAAGGACAAAAGATT
EST: gi|208287628|gb|GE081289.1|GE081289
EST:     TCTGGAATATGGCAAGAATACACTTCCCCCAATAATAAATAGGCCGATAG                         TTCAATCTGAAAGGGCTTCATACCCATCACCAAAACCAAGGACAAAAGATT
genomic: TCTGGAATATGGCAAGAATACACTTCCCCCAATAATAAATAGGCCGATAGgtgagatgac ... atctatgcagTTCAATCTGAAAGGGCTTCATACCCATCACCAAAACCAAGGACAAAAGATT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACCAAAATTGAAATCCGTCTTGCAAAAGCTGAAGCTATTAATTGGACATCTCTGGAATATGGCAAGAATACACTTCCCCCAATAATAAATAGGCCGATAGgtgagatgactatttatttagtttatcctttttgtgattctgttaggatccaattgcaaggtatgggacttgagtccgatgctggaagtgtgagattata

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAGA