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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCTGAACACATCAAAGTGGATTGAAGAGGTGCGCAGTGAGAGAGGCAGTGATGTTATTATTGTTCTTGTTGGGAACAAAACTGACCTTGTCGATAAGAGgtaataatggtagaatgatttggttgcttgaattgtttggaacttgagacgttccatgtttgctctacgttgttgttttcatgtcttgtgaaagtgttcttttaaatttcgattcatcagcccatttctggtgtcaccttatatttatgagcaatattatttgcatgcgtctatag

Basic information

species Glycine max
transcript GLYMA01G41090.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G41090.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os07g31370.1 (Oryza sativa), 5'ss of exon 4
TCCTGAACACATCAAAGTGGATTGAAGAGGTGCGCAGTGAGAGAGGCAGTGATGTTATTATTGTTCTTGTTGGGAACAAAACTGACCTTGTCGATAAGAGgtaataatggtagaatgatttggttgcttgaattgtttggaacttgagacgttccatgtttgctctacgttgttgttttcatgtcttgtgaaagtgttcttttaaatttcgattcatcagcccatttctggtgtcaccttatatttatgagcaatattatttgcatgcgtctatag
|||| ||||| ||||| ||||| || || ||  | | |||||| |||||||||||||| ||||| || ||||||||||||||||| ||||| || ||||||| |     ||  ||  |  |  ||| ||    | ||| |  |||      |  | || ||     | | | ||| | | |       | |   |  ||||| |  ||  |                                                                 
TCCTAAACACTTCAAAATGGATAGAGGAAGTTAGAACTGAGAGGGGCAGTGATGTTATCATTGTGCTGGTTGGGAACAAAACTGATCTTGTTGACAAGAGgtgagtggagttcaaaaaaattcttgttt----tctttagccctttcctgttatcttgcttatctgatgattttgctgtta------ataatgatcctcttt-accttctg-----------------------------------------------------------------

upper sequence: GLYMA01G41090.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G169694_T01 (Zea mays), 5'ss of exon 4
TCCTGAACACATCAAAGTGGATTGAAGAGGTGCGCAGTGAGAGAGGCAGTGATGTTATTATTGTTCTTGTTGGGAACAAAACTGACCTTGTCGATAAGAGgtaataatggtagaatgatttggttgcttgaattgtttggaacttgagacgttccatgtttgctctacgttgttgttttcatgtcttgtgaaagtgttcttttaaatttcgattcatcagcccatttctggtgtcaccttatatttatgagcaatattatttgcatgcgtctatag
|| | || ||||| |||||||| || || || |||| |||||| |||||||||||||| ||||| |||||||||||||||||||||||||| || |||||||  |  |||||     | ||   || ||      | |  | |||  | | | |   ||||||  |  |    | |      | |  |  | |     |||   |   |||                                                                 
TCTTAAATACATCTAAGTGGATAGAGGAAGTTCGCACTGAGAGGGGCAGTGATGTTATCATTGTGCTTGTTGGGAACAAAACTGACCTTGTTGACAAGAGgt--tggtggtatttacacttatctgatt------tctatatcttagggcatgcttggtttgcagtctgaaaatttgcctgggccaagcaata-----cttcccaggctcgta---------------------------------------------------------------

upper sequence: GLYMA01G41090.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G075719_T01 (Zea mays), 5'ss of exon 4
TCCTGAACACATCAAAGTGGATTGAAGAGGTGCGCAGTGAGAGAGGCAGTGATGTTATTATTGTTCTTGTTGGGAACAAAACTGACCTTGTCGATAAGAGgtaataatggtagaatgatttggttgcttgaattgtttggaact-tgagacgttccatgtttgctctacgttgttgttttcatgtcttgtgaaagtgttcttttaaatttcgattcatcagcccatttctggtgtcaccttatatttatgagcaatattatttgcatgcgtctatag
|| | || ||||| |||||||| || || || |||| |||||| |||||||||||||| ||||| |||||||||||||||||||||||||| || |||||||  |  |||| |  || | |   | | ||| || | | |   | |  |  | || |||| |  | |      |||  || |  |  | ||       || | | || |                                                                    
TCTTAAATACATCCAAGTGGATAGATGAAGTTCGCACTGAGAGGGGCAGTGATGTTATCATTGTGCTTGTTGGGAACAAAACTGACCTTGTTGACAAGAGgt--tggtggt-gtttgctct---ttcctgatttctgtagttttgttggttgctctatgtatattttgt----ttggctttaaattctttggtctctctcatgtcaagta-------------------------------------------------------------------