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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGACGTTCGGTTTACATAAATATTCAGAAATTCGTACAGTTTCAGCTTACCGTTAATGTGGTTGCATTAATAGTGAATTTCACATCAGCCTGCTTGACAGgttagaaagttaatttaattttgttaccacaaaatagggttatgtacttacataaacagcaaggaactgcactttttttgttttcacaccagcctgcatgacagattataaataaaaacactttttttgttttcttcttattagttatcttatgatcttacatgtattttctctatccag

Basic information

species Glycine max
transcript GLYMA01G40130.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G40130.2 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os03g10640.1 (Oryza sativa), 5'ss of exon 5
GGACGTTCGGTTTACATAAATATTCAGAAATTCGTACAGTTTCAGCTTACCGTTAATGTGGTTGCATTAATAGTGAATTTCACATCAGCCTGCTTGACAGgttagaaagttaatttaattttgttaccacaaaatagggttatgtacttacataaacagcaaggaactg-cactttttttgttttcacaccagcctgcatgacagattataaataaaaacactttttttgttttcttcttattagttatcttatgatcttacatgtattttctctatccag
|| || || || ||||| ||||||||||| || || ||||||||||| || || |||||||| ||  | |||||||| ||| | ||||| ||||||||||||   | || |||    || ||| |             ||| | ||| |   |  || | |  ||| ||  | |||  ||    | | |  | |||        | ||     ||| |||                                                             
GGTCGGTCAGTGTACATTAATATTCAGAAGTTTGTGCAGTTTCAGCTGACAGTCAATGTGGTCGCTCTGATAGTGAACTTCTCCTCAGCTTGCTTGACAGgt---acagctaa----atgttgat-------------gttttttacctcattctactgtatagaattgatagtttcgttccgattaaaataacctttgatgttggtttcttgtaataac-------------------------------------------------------------

upper sequence: GLYMA01G40130.2 (Glycine max), 5'ss of exon 5
lower sequence: AT2G22950.1 (Arabidopsis thaliana), 5'ss of exon 5
GGACGTTCGGTTTACATAAATATTCAGAAATTCGTACAGTTTCAGCTTACCGTTAATGTGGTTGCATTAATAGTGAATTTCACATCAGCCTGCTTGAC----AGgttagaaagttaatttaattttgttaccacaaaatagggttatgtacttacataaacagcaaggaactgcactttttttgttttcacaccagcctgcatgacagattataaataaaaacactttttttgttttcttcttattagttatcttatgatcttacatgtattttctctatccag
|||||||| |||||||| || ||||||||||| || |||||||| || || || ||||| |||||  | || || || ||| | ||||| ||||||||    | |||| | |  | |  | ||| ||||   |   || |   | || |  |||||   | |           |    ||| | | || ||    |  |  |    |  | | |                                                                      
GGACGTTCTGTTTACATTAACATTCAGAAATTTGTGCAGTTTCAACTAACAGTCAATGTTGTTGCCCTTATTGTTAACTTCTCTTCAGCTTGCTTGACTGgtaagttaaagaaattagctgattctgtttttattcaa-attttcatttttttacaattatattgt-------cttcgtttctatctttacttttgtttctaaattaattcacag---------------------------------------------------------------------

upper sequence: GLYMA01G40130.2 (Glycine max), 5'ss of exon 5
lower sequence: AT4G37640.1 (Arabidopsis thaliana), 5'ss of exon 5
GGACGTTCGGTTTACATAAATATTCAGAAATTCGTACAGTTTCAGCTTACCGTTAATGTGGTTGCATTAATAGTGAATTTCACATCAGCCTGCTTGACAGgttag---aaagttaatttaattttgttaccacaaaatagggttatgtacttacataaacagcaaggaactgcactttttttg-ttttcacaccagcctgcatgacagattataaataaaaacactttttttgttttcttcttattagttatcttatgatcttacatgtattttctctatccag
|||||||| ||||||||||| || ||||||||||| ||||||||||||||||||||||| |||||| |  | || || ||| | ||||| || || || |||  |   |     |||   | ||   |  | | ||| ||  | ||    ||  ||     |   |  || || ||| |  |  | ||||                                                                                              
GGACGTTCTGTTTACATAAACATCCAGAAATTCGTTCAGTTTCAGCTTACCGTTAATGTTGTTGCACTGGTTGTTAACTTCTCTTCAGCTTGTTTAACCGgtaggtttagtaagaataccaattcaatgtctcgaaa-agaatcat---tttggattccttgtttgacacagctcttatgataatcttcag---------------------------------------------------------------------------------------------

upper sequence: GLYMA01G40130.2 (Glycine max), 5'ss of exon 5
lower sequence: Vv07s0129g00180.t01 (Vitis vinifera), 5'ss of exon 5
GGACGTTCGGTTTACATAAATATTCAGAAATTCGTACAGTTTCAGCTTACCGTTAATGTGGTTGCATTAATAGTGAATTTCACATCAGCCTGCTTGACAGgttagaaagttaatttaattttgttaccacaaaat-agggttatgtacttacataaacagcaaggaactgcactttttttgttttcacaccagcctgcatgacagattataaataaaaacactttttttgttttcttcttattagttatcttatgatcttacatgtattttctctatccag
|||||||| || |||||||||||||| ||||| |||||||| || ||||| ||||| ||||||||||||||||| || ||| | ||||| || ||||||||| ||||     |    || ||| | |  | |  | |  ||||  | |||   |   ||  ||  |||| |   |||||| |    |||      |   |      || |   |  ||||||||                                                         
GGACGTTCAGTCTACATAAATATTCAAAAATTTGTACAGTTCCAACTTACGGTTAACGTGGTTGCATTAATAGTCAACTTCTCTTCAGCTTGTTTGACAGgtaagaag----accccatcttgcttcttccatttcaaagttacttccttgttttgtca--aataaacttcttcttttttctccctacat---tttttttattccttttttttttcaaacacttcag------------------------------------------------------

upper sequence: GLYMA01G40130.2 (Glycine max), 5'ss of exon 5
lower sequence: Vv07s0129g00110.t01 (Vitis vinifera), 5'ss of exon 4
GGACGTTCGGTTTACATAAATATTCAGAAATTCGTACAGTTTCAGCTTACCGTTAATGTGGTTGCATTAATAGTGAATTTCACATCAGCCTGCTTGACAGgttagaaagttaatttaattttgttaccacaaaat-agggttatgtacttacataaacagcaaggaactgcactttttttgttttcacaccagcctgcatgacagattataaataaaaacactttttttgttttcttcttattagttatcttatgatcttacatgtattttctctatccag
|||||||| || |||||||||||||| ||||| |||||||| || ||||| ||||| ||||||||||||||||| || ||| | ||||| || ||||||||| ||||     |    || ||| | |  | |  | |  ||||  | |||   |   ||  ||  |||| |   |||||| |    |||      |   |      || |   |  ||||||||                                                         
GGACGTTCAGTCTACATAAATATTCAAAAATTTGTACAGTTCCAACTTACGGTTAACGTGGTTGCATTAATAGTCAACTTCTCTTCAGCTTGTTTGACAGgtaagaag----accccatcttgcttcttccatttcaaagttacttccttgttttgtca--aataaacttcttcttttttctccctacat---tttttttattccttttttttttcaaacacttaag------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16279562|gb|BI943500.1|BI943500
EST:     CGTTAATGTGGTTGCATTAATAGTGAATTTCACATCAGCCTGCTTGACAG                         GAACTGCACCCCTCACAGCTGTTCAACTCTTGTGGGTGAACATGATAATGG
genomic: CGTTAATGTGGTTGCATTAATAGTGAATTTCACATCAGCCTGCTTGACAGgttagaaagt ... ctctatccagGAACTGCACCCCTCACAGCTGTTCAACTCTTGTGGGTGAACATGATAATGG