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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGTCGATTGATAGCCTTGAGAAGGAACGGGATTTCTACTTTGCAAAGCTGAGAGATATTGAGATACTGTGCCAGACTCCTGAGATAGAACACTCACCGgtactatgctttcagagtttttactttgatttaatttgattagtgaaacccattaattggtaatactattagtatctattagtattaggtattgatcttatgcgatttgattggttgtttgtgtgtcag

Basic information

species Glycine max
transcript GLYMA01G39720.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G39720.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv07s0129g01080.t01 (Vitis vinifera), 5'ss of exon 5
GTTGTCGATTGATAGCCTTGAGAAGGAACGGGATTTCTACTTTGCAAAGCTGAGAGATATTGAGATACTGTGCCAGACTCCTGAGATAGAACACTCACCGgtactatgctttcagagttttta--ctttgatttaatttgattagtgaaacccattaattggtaatactattagtatctattagtattaggtattgatcttatgcgatttgattggttgtttgtgtgtcag
| |||| || |||||||||||||||||  |||| ||||||||||||||  |||| |||||||| ||  ||||||||  ||| ||||| ||||||| | | |||   |  | | || | ||  |  |||| |    |||   ||  | |  |  | ||| |      |  || |||| | | |        || |   |  | | |  ||||                    
GCTGTCAATAGATAGCCTTGAGAAGGAGAGGGACTTCTACTTTGCAAAATTGAGGGATATTGAAATTTTGTGCCAGTGTCCAGAGATTGAACACTTAACTgtatggttttctgagcgcttcgaggctttaa---gattaatttcataatgcttaataacta-----aacatgagtaaccactgactgctagtgtc--ttctgtcctgtttgcag-----------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208339567|gb|GE138601.1|GE138601
EST:     GAGAGATATTGAGATACTGTGCCAGACTCCTGAGATAGAAACACTCACCG                         ATTGTTGCTGCGATACAGAAGATATTATATGCTACAGATGACAATGGAACG
genomic: GAGAGATATTGAGATACTGTGCCAGACTCCTGAGATAGAA-CACTCACCGgtactatgct ... tgtgtgtcagATTGTTGCTGCGATACAGAAGATATTATATGCTACAGATGACAATGGAACG
EST: gi|208337243|gb|GE134835.1|GE134835
EST:     TGAGAGATATTGAGATACTGTGCCAGACTCCTGAGATAGGACACTCACCG                         ATTGTTGCTGCGATACAGAAGATATTATATGCTACAGATGACAATGGAACG
genomic: TGAGAGATATTGAGATACTGTGCCAGACTCCTGAGATAGAACACTCACCGgtactatgct ... tgtgtgtcagATTGTTGCTGCGATACAGAAGATATTATATGCTACAGATGACAATGGAACG
EST: gi|193430384|gb|FK393302.1|FK393302
EST:     TGAGAGATATTGAGATACTGTGCCAGACTCCTGAGATAGAACACTCACCG                         ATTGTTGCTGCGATACAGAAGATATTATATGCTACAGATGACAATGGAACG
genomic: TGAGAGATATTGAGATACTGTGCCAGACTCCTGAGATAGAACACTCACCGgtactatgct ... tgtgtgtcagATTGTTGCTGCGATACAGAAGATATTATATGCTACAGATGACAATGGAACG
EST: gi|151393328|gb|EV263203.1|EV263203
EST:     TGAGAGATATTGAGATACTGTGCCAGACTCCTGAGATAGAACACTCACCG                         ATTGTTGCTGCGATACAGAAGATA
genomic: TGAGAGATATTGAGATACTGTGCCAGACTCCTGAGATAGAACACTCACCGgtactatgct ... tgtgtgtcagATTGTTGCTGCGATACAGAAGATA
EST: gi|192296791|gb|FG993089.1|FG993089
EST:     TGAGAGATATTGAGATACTGTGCCAGACTCCTGAGATAGAACACTCACCG                         ATTGTTGCTGCGATACAGAAGATATTATATGCTACAGATGACAATGGGACG
genomic: TGAGAGATATTGAGATACTGTGCCAGACTCCTGAGATAGAACACTCACCGgtactatgct ... tgtgtgtcagATTGTTGCTGCGATACAGAAGATATTATATGCTACAGATGACAATGGAACG
EST: gi|192333803|gb|FK025064.1|FK025064
EST:     TGAGAGATATTGAGATACTGTGCCAGACTCCTGAGATAGAACACTCACCG                         ATTGTTGCTGCGATACAGAAGATATTATATGCTACAGATGACAATGGAACG
genomic: TGAGAGATATTGAGATACTGTGCCAGACTCCTGAGATAGAACACTCACCGgtactatgct ... tgtgtgtcagATTGTTGCTGCGATACAGAAGATATTATATGCTACAGATGACAATGGAACG
EST: gi|7685270|gb|AW755918.1|AW755918
EST:     TGAGAGATATTGAGATACTGTGCCAGACTCCTGAGATAGAACACTCACCG                         ATTGTTGCTGCGATACAGAAGATATTATATGCTACAGATGACAATGGAACG
genomic: TGAGAGATATTGAGATACTGTGCCAGACTCCTGAGATAGAACACTCACCGgtactatgct ... tgtgtgtcagATTGTTGCTGCGATACAGAAGATATTATATGCTACAGATGACAATGGAACG
EST: gi|192301066|gb|FG987991.1|FG987991
EST:     TGAGAGATATTGAGATACTGTGCCAGACTCCTGAGATAGAACACTCACCG                         ATTGTTGCTGCGATACAGAAGATATTATATGCTACAGATGACA-TGGGAAC
genomic: TGAGAGATATTGAGATACTGTGCCAGACTCCTGAGATAGAACACTCACCGgtactatgct ... tgtgtgtcagATTGTTGCTGCGATACAGAAGATATTATATGCTACAGATGACAATGG-AAC
EST: gi|22929992|gb|BU547131.1|BU547131
EST:     TGAGAGATATTGAGATACTGTGCCAGACTCCTGAGATAGAACACTCACCG                         ATTGTTGCTGCGATACAGAAGATATTATATGCTACAGATGACAATGGAACG
genomic: TGAGAGATATTGAGATACTGTGCCAGACTCCTGAGATAGAACACTCACCGgtactatgct ... tgtgtgtcagATTGTTGCTGCGATACAGAAGATATTATATGCTACAGATGACAATGGAACG