1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
GAAGTACTATCAAGTGAGCATATTCTTGGTAATAGGACGCTGGAAGTCAAAGTGGCAACACCAAAGgtttgaaacttgaaatctggtctgctttgtagctggtttagtttttatgtacaataaaatagccatatattttgattgtactatttattctgtaatgctttcatattaaag
species | Glycine max |
transcript | GLYMA01G39330.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AGCATATTCTTGGTAATCGGACGCTGGAAGTCAAAGTGGCAACACCAAAG GAGGAAATGAGGGCACCGGTCAAAAAAGTTACTAGAATATTTGTAGCCAGGEST: gi|192326076|gb|FK016228.1|FK016228
genomic: AGCATATTCTTGGTAATAGGACGCTGGAAGTCAAAGTGGCAACACCAAAGgtttgaaact ... catattaaagGAGGAAATGAGGGCACCGGTCAAAAAAGTTACTAGAATATTTGTAGCCAGG
EST: AGCATATTCTTGGTAATAGGACGCTGGAAGTCAAAGTGGCAACACCAAAG GAGGAAATGAGGGCACCGGTCAAAAAAGTTACTAGAATATTTGTAGCCAGGEST: gi|207728654|gb|GD705290.1|GD705290
genomic: AGCATATTCTTGGTAATAGGACGCTGGAAGTCAAAGTGGCAACACCAAAGgtttgaaact ... catattaaagGAGGAAATGAGGGCACCGGTCAAAAAAGTTACTAGAATATTTGTAGCCAGG
EST: AGCATATTCTTGGTAATAGGACGCTGGAAGTCAAAGTGGCAACACCAAAG GAGGAAATGAGGGCACCGGTCAAAAAAGTTACTAGAATATTTGTAGCCAGGEST: gi|254318602|gb|GR832770.1|GR832770
genomic: AGCATATTCTTGGTAATAGGACGCTGGAAGTCAAAGTGGCAACACCAAAGgtttgaaact ... catattaaagGAGGAAATGAGGGCACCGGTCAAAAAAGTTACTAGAATATTTGTAGCCAGG
EST: CTTGGTAATAGGACGCTGGAAGTCAAAGTGGCAACACCAAAG GAGGAAATGAGGGCACCGGTCAAAAAAGTTACTAGAATATTTGTAGCCAGGEST: gi|254337733|gb|GR845303.1|GR845303
genomic: CTTGGTAATAGGACGCTGGAAGTCAAAGTGGCAACACCAAAGgtttgaaact ... catattaaagGAGGAAATGAGGGCACCGGTCAAAAAAGTTACTAGAATATTTGTAGCCAGG
EST: AGCATATTCTTGGTAATAGGACGCTGGAAGTCAAAGTGGCAACACCAAAG GAGGAAATGAGGGCACCGGTCAAAAAAGTTACTAGAATATTTGTAGCCAGG
genomic: AGCATATTCTTGGTAATAGGACGCTGGAAGTCAAAGTGGCAACACCAAAGgtttgaaact ... catattaaagGAGGAAATGAGGGCACCGGTCAAAAAAGTTACTAGAATATTTGTAGCCAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAGTACTATCAAGTGAGCATATTCTTGGTAATAGGACGCTGGAAGTCAAAGTGGCAACACCAAAGgtttgaaacttgaaatctggtctgctttgtagctggtttagtttttatgtacaataaaatagccatatattttgattgtactatttattctgtaatgctttcatattaaag
- - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - TGGAAG