1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GAAGTGTGTCACCGGGACCTGAAGTTGGAAAACACGTTGTTGGATGGAAGCCCGGCGCTTCATTTGAAGATATGTGATTTTGGATACTCCAAGgtaagtgtttcttcatcatagtgtgggttccttgcttatatattttactgggaagtgtagactctggttcagtaagtttacctttaaataatacttttgt...
species | Glycine max |
transcript | GLYMA01G39020.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: ATGGAAGCCCGGCGCTTCATTTGAAGATATGTGATGTTGGATACTTCAAG TCTTCCGTGCTTCATTCACAACCTAAGTACA-CTGTGGGAACTCCAACATAEST: gi|7693434|gb|AW761526.1|AW761526
genomic: ATGGAAGCCCGGCGCTTCATTTGAAGATATGTGATTTTGGATACTCCAAGgtaagtgttt ... ttattggcagTCTTCCGTGCTTCATTCACAACCTAAGT-CAACTGTGGGAACTCCAGCATA
EST: ATGGAAGCCCGGCACTTCATTTGAAGATATGTGATTTTGGATACTCCAAG TCTTCGGTGCTTCATTCACAACCTAAGTCAACTGTGGGAACTCCAGCATATEST: gi|21888347|gb|BQ741560.1|BQ741560
genomic: ATGGAAGCCCGGCGCTTCATTTGAAGATATGTGATTTTGGATACTCCAAGgtaagtgttt ... ttattggcagTCTTCCGTGCTTCATTCACAACCTAAGTCAACTGTGGGAACTCCAGCATAT
EST: ATGGAAGCCCGGCACTTCATTTGAAGATATGTGATTTTGGATACTCCAAG TCTTCGGTGCTTCATTCACAACCTAAGTCAACTGTGGGAACTCCAGCATATEST: gi|27424851|gb|CA936371.1|CA936371
genomic: ATGGAAGCCCGGCGCTTCATTTGAAGATATGTGATTTTGGATACTCCAAGgtaagtgttt ... ttattggcagTCTTCCGTGCTTCATTCACAACCTAAGTCAACTGTGGGAACTCCAGCATAT
EST: ATGGAAGCCCGGCACTTCATTTGAAGATATGTGATTTTGGATACTCCAAG TCTTCGGTGCTTCATTCACAACCTAAGTCAACTGTGGGAACTCCAGCATATEST: gi|11413312|gb|BF425323.1|BF425323
genomic: ATGGAAGCCCGGCGCTTCATTTGAAGATATGTGATTTTGGATACTCCAAGgtaagtgttt ... ttattggcagTCTTCCGTGCTTCATTCACAACCTAAGTCAACTGTGGGAACTCCAGCATAT
EST: ATGGAAGCCCGGCACTTCATTTGAAGATATGTGATTTTGGATACTCCAAG TCTTCGGTGCTTCATTCACAACCTAAGTCAACTGTGGGAACTCCAGCATAT
genomic: ATGGAAGCCCGGCGCTTCATTTGAAGATATGTGATTTTGGATACTCCAAGgtaagtgttt ... ttattggcagTCTTCCGTGCTTCATTCACAACCTAAGTCAACTGTGGGAACTCCAGCATAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAGTGTGTCACCGGGACCTGAAGTTGGAAAACACGTTGTTGGATGGAAGCCCGGCGCTTCATTTGAAGATATGTGATTTTGGATACTCCAAGgtaagtgtttcttcatcatagtgtgggttccttgcttatatattttactgggaagtgtagactctggttcagtaagtttacctttaaataatacttttgt
- - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtgtggg