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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCAACTTTAGCTACTTTTGTTGCTGTATATGCACTGTTTGGGCCCACATATCCTGGAATTTTTGACAAGGATAGAGGCATTTACACCCTATTCTATCCGgtacatattttggatatcaaatgcctctctattattgctttttttttaccccctacaattccacattactaatactttctgctttgctcttcacag

Basic information

species Glycine max
transcript GLYMA01G37380.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G37380.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv04s0023g02970.t01 (Vitis vinifera), 5'ss of exon 5
ATCAACTTTAGCTACTTTTGTTGCTGTATATGCACTGTTTGGGCCCACATATCCTGGAATTTTTGACAAGGATAGAGGCATTTACACCCTATTCTATCCGgtacatattttg-gatatc-aaatgcctctctattattgctttttttttaccccctacaattccacattactaatactttctgctttgctcttcacag
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ATCAACTCTAGCTACTTTTGTAGCTGTATATGCACTTTTTGGACCAACTTTTCCAGGAAGTTACGACAAAGATAGAGGTGTTTACACTCTGTTCTACCCGgtatatacaagaagatatttaagcaaaattttgttcatttttctttgaaaatttgttttcttccatgctgagatttctttggtgtctgtattttgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9258430|gb|BE346577.1|BE346577
EST:     CATTTACACCCTATTCTATCCG                         GGGCTTTCCTTTGCATTTCCTATTCCAAGTCAATTTACAGATTGCTGTCAT
genomic: CATTTACACCCTATTCTATCCGgtacatattt ... ctcttcacagGGGCTTTCCTTTGCATTTCCTATTCCAAGTCAATTTACAGATTGCTGTCAT