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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTATACTGAAAAAGATGCAGCTGTGGTTGTAAGGCAGATGCTAAAGGTTGCGGCTGAGTGTCATTTACATGGGTTGGTACACCGGGACATGAAACCAGAGgtatggtcaagttcgctagcatatctacgcaatatggatttgtatatgctactatacattaaaattttcctctttgcag

Basic information

species Glycine max
transcript GLYMA01G37100.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G37100.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os07g22710.3 (Oryza sativa), 5'ss of exon 3
TTATACTGAAAAAGATGCAGCTGTGGTTGTAAGGCAGATGCTAAAGGTTGCGGCTGAGTGTCATTTACATGGGTTGGTACACCGGGACATGAAACCAGAGgtatggtcaagttcgctagcatatctacgcaatatggatttgtatatgctactatacattaaaattttcctctttgcag
|||||  || |||||||| || || |||||  |||| ||||| |||||||| |||||||| ||||| ||||| ||||| || ||||||||||| || |||||||| || |       || | |   |  | |  |    || ||   |  | |   ||||  | | |   | ||| |||
TTATAGCGAGAAAGATGCTGCAGTAGTTGTGCGGCAAATGCTCAAGGTTGCTGCTGAGTGCCATTTGCATGGTTTGGTTCATCGGGACATGAAGCCTGAGgtatgctctaaa-----agtaca---agactaagtcttcttataagagtaattgatcatttga-tatgtgtatttacag

upper sequence: GLYMA01G37100.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G365035_T01 (Zea mays), 5'ss of exon 4
TTATACTGAAAAAGATGCAGCTGTGGTTGTAAGGCAGATGCTAAAGGTTGCGGCTGAGTGTCATTTACATGGGTTGGTACACCGGGACATGAAACCAGAGgtatggtc---aagttc--gctagcatatctacgcaatatggatttgtatatgctactatacattaaaattttcctctttgcag-------------
||| |  || |||||||| || || |||||  | |||||||| |||||||| |||||||| ||  | ||||| ||||| || |||||||||||||| |||||||  ||   ||||    | ||| ||     |  ||   | | |||   || |   | ||    ||    |  ||  |                  
TTACAGCGAGAAAGATGCTGCAGTAGTTGTCCGACAGATGCTCAAGGTTGCAGCTGAGTGCCACCTGCATGGTTTGGTTCATCGGGACATGAAACCTGAGgtatactctgaaagtataagatagaatcctgtcataaatagtagttgctaatacctttttattaaaaggagtagctaataatcttattggtgtgtag

upper sequence: GLYMA01G37100.1 (Glycine max), 5'ss of exon 5
lower sequence: AT2G17890.1 (Arabidopsis thaliana), 5'ss of exon 4
TTATACTGAAAAAGATGCAGCTGTGGTTGTAAGGCAGATGCTAAAGGTTGCGGCTGAGTGTCATTTACATGGGTTGGTACACCGGGACATGAAACCAGAGgtatggtcaagttcgctagcatatctacgcaatatggatttgtatatgctactatacattaaaattttcctctttgcag-----------------
|||||  || | ||| || || ||||| || || || ||||| || ||||||||||||||||||||||  || ||||| ||||| || ||||||||||||||| | | || | | | | |||    | |   | || || ||||||      | ||     || | ||  | ||| |                   
TTATAGCGAGAGAGACGCGGCCGTGGTGGTGAGACAAATGCTGAAAGTTGCGGCTGAGTGTCATTTACGCGGTTTGGTTCACCGAGATATGAAACCAGAGgta-gcttaattactccatcat---catgtt-tctgaatgtgtatagttggttttattcacaagtattgttttttactaatcatcttctcaaacag

upper sequence: GLYMA01G37100.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv04s0023g03420.t01 (Vitis vinifera), 5'ss of exon 4
TTATACTGAAAAAGATGCAGCTGTGGTTGTAAGGCAGATGCTAAAGGTTGCGGCTGAGTGTCATTTACATGGGTTGGTACACCGGGACATGAAACCAGAGgtatggtcaagttcgctagcatatctacgcaatatggatttg-tatat-gctactatacattaaaattttcctctttgcag-----------------
||||| ||| |||||||||||    ||||||||||||||||| || ||||| ||||||||||||||||||||  |||||||||| |||||||||||||||||||  | ||||| ||| ||| |  |    | | ||| |||  | | | || | ||| |  |||   |     | || ||                  
TTATAGTGAGAAAGATGCAGCAAAAGTTGTAAGGCAGATGCTCAAAGTTGCAGCTGAGTGTCATTTACATGGTCTGGTACACCGTGACATGAAACCAGAGgtataatgaagtttgctggcacacatcaaaattttggctttaatttgtagccattatgc-ctaatggtgcttcccttacatttttttatcgcatgtag