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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAAGCTGGAAGCACTCCTCGCAGCTGTTAACAATAATGATACCAGCCACATTGTTCATGTTCCATCTGGTCCTAATGCCCTTTCTGATGTACTTATAAGgttcgtgggctcaatttcatcgtgtgttttttcttttttgtcccttgtttctctcttaagataagttcaatgtaacttttttgatctaattttgatattcatgcgatgttgctttctggcag

Basic information

species Glycine max
transcript GLYMA01G36990.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G36990.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv04s0023g03620.t01 (Vitis vinifera), 5'ss of exon 5
AGAAGCTGGAAGCACTCCTCGCAGCTGTTAACAATAATGATACCAGCCACATTGTTCATGTTCCATCTGGTCCTAATGCCCTTTCTGATGTACTTATAAGgttcgtgggctcaatttcatcgtgtgttttttcttttttgtcccttgtttctctcttaagataagttcaatgtaacttttttgatctaattttgatattcatgcgatgttgctttctggcag
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AGAAACTTGAGGCCCTTCTTGGTTCTGTAAACAACAATGATAGTAGCCACATAGTTCATGTTCCTGCTGGTCCAAATGCTCTTTCTGACGTGCTTATAAGgtaactggtca-actttcat--tttttttttttttcattctcgcatgacattgtagaaaattatga-cagtgtaa----tttcatcttatat--attcttttgttttgtttcctcatggcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192294443|gb|FG987372.1|FG987372
EST:     ATTGTTCATGTTCCATCTGGTCCTAATGCCCTTTCTGATGTACTTATAAG                         TACACCTATTTTCACTGGTGATGGGGAAGGTGGAAGTGGTTTTGCAGCTGC
genomic: ATTGTTCATGTTCCATCTGGTCCTAATGCCCTTTCTGATGTACTTATAAGgttcgtgggc ... tttctggcagTACACCTATTTTCACTGGTGATGGGGAAGGTGGAAGTGGTTTTGCAGCTGC
EST: gi|151394320|gb|EV264191.1|EV264191
EST:     ATTGTTCATGTTCCATCTGGTCCTAATGCCCTTTCTGATGTACTTATAAG                         TACACCTATTTTCACTGGTGATGGGGAAGGTGGAAGTGGTTTTGCAGCTGC
genomic: ATTGTTCATGTTCCATCTGGTCCTAATGCCCTTTCTGATGTACTTATAAGgttcgtgggc ... tttctggcagTACACCTATTTTCACTGGTGATGGGGAAGGTGGAAGTGGTTTTGCAGCTGC
EST: gi|6069798|gb|AW099406.1|AW099406
EST:     ATTGTTCATGTTCCATCTGGTCCTAATGCCCTTTCTGATGTACTTATAAG                         TACACCTATTTTCACTGGTGATNGGGAA
genomic: ATTGTTCATGTTCCATCTGGTCCTAATGCCCTTTCTGATGTACTTATAAGgttcgtgggc ... tttctggcagTACACCTATTTTCACTGGTGATGGGGAA
EST: gi|207712992|gb|GD692916.1|GD692916
EST:     CTGATGTACTTATAAG                         TACACCTATTTTCACTGGTGATGGGGAAGGTGGAAGTGGTTTTGCAGCTGC
genomic: CTGATGTACTTATAAGgttcgtgggc ... tttctggcagTACACCTATTTTCACTGGTGATGGGGAAGGTGGAAGTGGTTTTGCAGCTGC