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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGCGAAAATTGGGGAGGGGATTTTATTAGATCATGGGACAGGTGTGGTTATTGGTGAAACTGCTATTGTTGGAAACAGAGTTTCACTGATGCATgtgagttgtgattcttcattaatttcttctatgattatttttgttagctcttttacaaactttaatcatctcaaataattagctatttattatttcctat...

Basic information

species Glycine max
transcript GLYMA01G36460.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G36460.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os03g04140.1 (Oryza sativa), 5'ss of exon 6
CTGCGAAAATTGGGGAGGGGATTTTATTAGATCATGGGACAGGTGTGGTTATTGGTGAAACTGCTATTGTTGGAAACAGAGTTTCACTGATGCATgtgagttg--tgattcttcattaatttcttctatgatt--atttttgttagctcttttacaaactttaatcatctcaaataattagctatttattatttcctat
| || | |||||| ||||| || || || |||||||| || ||| | ||||||||||||||||| |||||||||||| | |||||| | ||||| |||    |  | | ||    ||   |   |  |  |||  |  |     ||  ||| || |  |  |  |  | |  |  | |     |  | |  |       
CGGCCAGAATTGGAGAGGGAATATTGTTGGATCATGGAACGGGTCTAGTTATTGGTGAAACTGCCATTGTTGGAAACTGGGTTTCATTAATGCAGgtgcccagcataactcagtttttgctagctgcaaaattcaaaataaagcagtacttctagatgcaattttagttttgagcactacaacaggtgtgctgat----

upper sequence: GLYMA01G36460.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G048740_T03 (Zea mays), 5'ss of exon 6
CTGCGAAAATTGGGGAGGGGATTTTATTAGATCATGGGACAGGTGTGGTTATTGGTGAAACTGCTATTGTTGGAAACAGAGTTTCACTGATGCATgtgagt-tgtgattc--ttcattaatttcttctatgattatttttgttagctcttttacaaactttaatcatctcaaataattagctatttattatttcctat
|||| |||||||| ||||| || || || |||||||| |||||| | || ||||||||||||||| | ||||||||| | |||||| | ||||| |||| |   | |  |    |  |  || |||  | ||  |      ||   ||   ||  |  ||| || |    |  |   |   | ||| || |||     
CTGCCAAAATTGGCGAGGGAATATTGTTGGATCATGGAACAGGTCTAGTCATTGGTGAAACTGCTGTAGTTGGAAACTGGGTTTCATTAATGCAGgtgaatgcataaaccaaccctctttttcctttaaggaacaccacaattt-ttcccgtatgattttttattacacaatttgcatgtttgtttcttgtttgag--

upper sequence: GLYMA01G36460.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv04s0210g00190.t01 (Vitis vinifera), 5'ss of exon 6
CTGCGAAAATTGGGGAGGGGATTTTATTAGATCATGGGACAGGTGTGGTTATTGGTGAAACTGCTATTGTTGGAAACAGAGTTTCACTGATGCATgtgagttgtgattcttcattaatttcttctatgattatttt---tgttagctcttttacaaacttta-atcatctcaaataattagctatttattatttcctat
||||  ||||||| ||||  ||  |  | |||||||  ||||| |||||||| |||||||||||| |||| ||||| ||||||||| | ||||| || | ||| | ||||   ||  |  | |    |  |   |    || || |  ||    |   |||| |  |  |   ||  | |     | | |     |   
CTGCACAAATTGGAGAGGAAATACTTCTGGATCATGCAACAGGCGTGGTTATAGGTGAAACTGCTGTTGTAGGAAATAGAGTTTCATTAATGCAGgtaatttg-gcttctatcttcctgcccttggggcctggctcaagtgataacagttagggagggtttataggaggttccatgttcaaaatgtcaatggggac---