1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CAACTCTTGTCTTTTCAGCAAGCTCTTCTGTCTCAGCTTGGTCAGCAACAATCAACACAgtaagaaatggagcaatctttgcatttctattttcacatgccttttgttttttactcccccaaaagaaacaataacatccttttattactgctaacttgt...
species | Glycine max |
transcript | GLYMA01G36410.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TCTTTTCAGCAAGCTCTTCTGTCTCAGCTTGGTCAGCAACAATCAACACA GGAACCAGGTCAAACAGGTGGAGGCACTGEST: gi|9820326|gb|BE555836.1|BE555836
genomic: TCTTTTCAGCAAGCTCTTCTGTCTCAGCTTGGTCAGCAACAATCAACACAgtaagaaatg ... gctttttcagGGAACCAGGTCAAACAGGTGGAGGCACTG
EST: TCTTTTCAGCAAGCTCTTCTGTCTCAGCTTGGTCAGCAACAATCAACACA GGAACCAGGTCAAACAGGTGGAGGCACTGEST: gi|254343277|gb|GR856981.1|GR856981
genomic: TCTTTTCAGCAAGCTCTTCTGTCTCAGCTTGGTCAGCAACAATCAACACAgtaagaaatg ... gctttttcagGGAACCAGGTCAAACAGGTGGAGGCACTG
EST: TC-TTTCAGCAAGCTCTTCTGTCTCAGCTTGGTCAGCAACAATCAACACA GGAACCAGGTCAAACAGGTGGAGGCACTGEST: gi|6072998|gb|AW102385.1|AW102385
genomic: TCTTTTCAGCAAGCTCTTCTGTCTCAGCTTGGTCAGCAACAATCAACACAgtaagaaatg ... gctttttcagGGAACCAGGTCAAACAGGTGGAGGCACTG
EST: TCTTTTCAGCAAGCTCTTCTGTCTCAGCTTGGTCAGCAACAATCAACACA GGAACCAGGTCAAACAGGTGGAGGCACTG
genomic: TCTTTTCAGCAAGCTCTTCTGTCTCAGCTTGGTCAGCAACAATCAACACAgtaagaaatg ... gctttttcagGGAACCAGGTCAAACAGGTGGAGGCACTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAACTCTTGTCTTTTCAGCAAGCTCTTCTGTCTCAGCTTGGTCAGCAACAATCAACACAgtaagaaatggagcaatctttgcatttctattttcacatgccttttgttttttactcccccaaaagaaacaataacatccttttattactgctaacttgt
- - - - - - - - AGCAAG
- - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctccccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaagaaa