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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTAAGAGAGGAAGGATTTGCATCTTTCTACTATGGCCTTGGGCCTTCTCTGATTGGAATAGCTCCATATATTGCAGTGAACTTTTGTGTTTTTGATTTgtgagttcattagtaatcttttatcatataagaacattggatattggacagacattgataaccttctatggataatag

Basic information

species Glycine max
transcript GLYMA01G28890.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G28890.1 (Glycine max), 5'ss of exon 5
lower sequence: AT3G51870.1 (Arabidopsis thaliana), 5'ss of exon 7
TGCTAAGAGAGGAAGGATTTGCATCTTTCTACTATGGCCTTGGGCCTTCTCTGATTGGAATAGCTCCATATATTGCAGTGAACTTTTGTGTTTTTGATTTgtgagttcattag--taatcttttatca--tataagaacat---tggatattggacagacattga---taaccttctatggataatag
||||  | || |||||| | ||||||||||| || || || || ||||||||  | || ||||||||||||||||| || ||||||||| |||| ||| |||||||   | |   |    || ||||   | |||| || |    ||| |    |     |  |    |||  || | | |  || ||
TGCTCCGTGATGAAGGAATCGCATCTTTCTATTACGGTCTAGGACCTTCTCTAGTGGGGATAGCTCCATATATTGCTGTAAACTTTTGTATTTTCGATCTgtgagtctttcaaactttctttctatctgttttaagtacctgtacggaaacaaaatttgaaccgggcttaatattgttttggcaacag

upper sequence: GLYMA01G28890.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv08s0007g02230.t01 (Vitis vinifera), 5'ss of exon 7
TGCTAAGAGAGGAAGGATTTGCATCTTTCTACTATGGCCTTGGGCCTTCTCTGATTGGAATAGCTCCATATATTGCAGTGAACTTTTGTGTTTTTGATTTgtgagttcatta-----gtaatcttt------tatcatataagaacattgg------atattggacagacat-tgataaccttctatggataatag-
| ||||||||||||||| ||||||| |||||  | || ||||| ||||||||  |||||||||| || || ||||| ||||||||||| |||||||||||||||| |   |       | | | ||      ||     | ||||||          |||||   | || |  |||    ||||||||| ||||   
TACTAAGAGAGGAAGGAGTTGCATCCTTCTATAAGGGTCTTGGACCTTCTCTTCTTGGAATAGCACCTTACATTGCTGTGAACTTTTGCGTTTTTGATTTgtgagcttcctcttcccatgaccattacagcttagtgagtgagaacacaaacagaatatattcatctgagacatgaatctcttctatgggtaatcag