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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTTTGGTGCCCTTATCATTGCAAAGCTTCTGAGTGTTCCTATTGTCATGTCCTATCACACCCACGTACCAGTgtaagttacttatttaggatcaatttggctaaacttcttgattgatactcataggtgaagaaagtaggaggtaaaatgaatcaaacttctttaataagtt...

Basic information

species Glycine max
transcript GLYMA01G27840.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G27840.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G477503_T01 (Zea mays), 5'ss of exon 4
--------------------------GTTTTTGGTGCCCTTATCATTGCAAAGCTTCTGAGTGTTCCTATTGTCATGTCCTATCACACCCACGTACCAGTgtaagttacttatttaggatcaatttggctaaacttcttgattgatactcataggtgaagaaagtaggaggtaaaatgaatcaaacttctttaataagtt-
                          |||||||| || ||    ||||| ||||| ||  |||| ||  | |||||||||||||||||||| || ||||||||||||   |||      |  |||   | ||  ||        | |  || | ||  |||   |     |  |  ||||||| | ||||||     |   
ATGACTAAAGTTCATTACTCTTTCAGGTTTTTGGAGCTCTAGCTATTGCCAAGCTACTCGGTGTGCCCCTAGTCATGTCCTATCACACCCATGTTCCAGTgtaagttgactat--gaactttattgcaccaagttttactgcaaacagacagaagttcagatttttcattgccat-tgaatcatatttctttttcttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|20812039|gb|BQ296517.1|BQ296517
EST:     AAGCTTCTGAGTGTTCCTATTGTCATGTCCTATCACACCCACGTACCAGT                         ATACATTCCAAGATACACCTTTAGCTGGCTGGTGCAACCCATGTGGTGGGT
genomic: AAGCTTCTGAGTGTTCCTATTGTCATGTCCTATCACACCCACGTACCAGTgtaagttact ... tgttgttcagATACATTCCAAGATACACCTTTAGCTGGCTGGTGCAACCCATGTGGTGGGT
EST: gi|213599235|gb|DB960003.1|DB960003
EST:     AAGCTTCTGAGTGTTCCTATTGTCATGTCCTATCACACCCACGTACCAGT                         ATACATTCCAAGATACACCTTTAGCTGGCTGG
genomic: AAGCTTCTGAGTGTTCCTATTGTCATGTCCTATCACACCCACGTACCAGTgtaagttact ... tgttgttcagATACATTCCAAGATACACCTTTAGCTGGCTGG
EST: gi|254334106|gb|GR849024.1|GR849024
EST:     AAGCTTCTGAGTGTTCCTATTGTCATGTCCTATCACACCCACGTACCAGT                         ATACATTCCAAGATACACCTTTAGCTGGCTGGTGCAACCCATGTGGTGGGT
genomic: AAGCTTCTGAGTGTTCCTATTGTCATGTCCTATCACACCCACGTACCAGTgtaagttact ... tgttgttcagATACATTCCAAGATACACCTTTAGCTGGCTGGTGCAACCCATGTGGTGGGT