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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTGAAAATTCCCGGATTCACTGACAATGTTGTAACTCATCTCCTTGCTGGTCTTGGGGCAGGGTTTTTTGCGGTCTGTATTGGCTCCCCAGTTGATGTGgtaatgttttagaatttactaatgaatatccattgttgatttgtcttttatttttattgtctcaccattatatatgtagtgtgttcataaataattgttt...

Basic information

species Glycine max
transcript GLYMA01G27120.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G27120.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv08s0007g01700.t01 (Vitis vinifera), 5'ss of exon 6
TTTGAAAATTCCCGGATTCACTGACAATGTTGTAACTCATCTCCTTGCTGGTCTTGGGGCAGGGTTTTTTGCGGTCTGTATTGGCTCCCCAGTTGATGTGgtaatgttttagaatttactaatgaatatccattgttgatttgtcttttat---ttttattgtctcaccattatatatgtagtgtgttcataaataattgttt
|||||||||||| || ||||  || |||||| | ||||||||| | |||||| | ||||| || ||||| || ||||||||||||||||||||||| ||||||    | ||   |    |      | | ||       ||| | |||| |   |||||  |  | |   | |||    ||     |  |   |  | ||   
TTTGAAAATTCCAGGGTTCAAAGATAATGTTTTGACTCATCTCTTAGCTGGTTTGGGGGCGGGTTTTTTCGCAGTCTGTATTGGCTCCCCAGTTGACGTGgtatctctctattttcacatttcctctcttcaaaaagagtttttgttttgtgcattttacagcatgatagtgatactgataaccattctacttaagaatg---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254340376|gb|GR858501.1|GR858501
EST:     GTCTTGGGGCAGGGTTTTTTGCGGTCTGTATTGGCTCCCCAGTTGATGTG                         GTTAAGTCAAGAATGATGGGAGATTCTAGTTACAGGAACACCCTTGATTGT
genomic: GTCTTGGGGCAGGGTTTTTTGCGGTCTGTATTGGCTCCCCAGTTGATGTGgtaatgtttt ... gtctatgcagGTTAAGTCAAGAATGATGGGAGATTCTAGTTACAGGAACACCCTTGATTGT
EST: gi|254340375|gb|GR858500.1|GR858500
EST:     GTCTTGGGGCAGGGTTTTTTGCGGTCTGTATTGGCTCCCCAGTTGATGTG                         GTTAAGTCAAGAATGATGGGAGATTCTAGTTACAGGAACACCCTTGATTGT
genomic: GTCTTGGGGCAGGGTTTTTTGCGGTCTGTATTGGCTCCCCAGTTGATGTGgtaatgtttt ... gtctatgcagGTTAAGTCAAGAATGATGGGAGATTCTAGTTACAGGAACACCCTTGATTGT