Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTTGCAGAAAGAGCAGAAAGCCTTCTGCTCTCCTTGAAGCAGCGTTTCCCTGCTCTTCCTCAAACAGCCTTGGATATGAGCAAAATCCAATGCAACAAGgttagtatctaattatttataatgttccactttaaagcctttttatggcttacatatgtttttggtaggtttgtgttagttcctattagtccctacattt...

Basic information

species Glycine max
transcript GLYMA01G26010.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G26010.1 (Glycine max), 5'ss of exon 5
lower sequence: AT5G02010.1 (Arabidopsis thaliana), 5'ss of exon 6
ACTTGCAGAAAGAGCAGAAAGCCTTCTGCTCTCCTTGAAGCAGCGTTTCCCTGCTCTTCCTCAAACAGCCTTGGATATGAGCAAAATCCAATGCAACAAGgttagtatctaattatttataatgttccactttaaagcctttttatggcttaca-tatgtttttggtaggtttgtgttagttcc-tattagtccctacattt
| | || ||  |||| |||||  |  |||| || || || || || ||||| | |||||||||||| ||  | || |||||||||||||||| ||||||||||| ||  |    ||  |         |    ||| | || ||    |||  | |  | | |    || |||   ||   ||  | ||||           
AATGGCGGATCGAGCTGAAAGTTTATTGCTTTCTTTAAAACAACGATTCCCAGGTCTTCCTCAAACCGCTCTAGACATGAGCAAAATCCAATACAACAAGgttactacatggaaatcaa---------atcccaaatcattctttcttcttgtaatccgctctaaacagttttcctttttctctgttttag-----------

upper sequence: GLYMA01G26010.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv08s0007g01380.t01 (Vitis vinifera), 5'ss of exon 6
ACTTGCAGAAAGAGCAGAAAGCCTTCTGCTCTCCTTGAAGCAGCGTTTCCCTGCTCTTCCTCAAACAGCCTTGGATATGAGCAAAATCCAATGCAACAAGgttagtatctaattattta-taatgttccactttaaagcctttttatggcttacatatgtttttggtaggtttgtgttagttcctattagtccctacattt
 |||||||||||||||||||||||  |||  | | |||||||||| ||||||| ||| || |||||| |||| |||||||||||||| || |  |||||||||    |  |   | | | || | ||   || | |   | ||| ||    ||  ||  |  |   |   ||    |||     ||||             
GCTTGCAGAAAGAGCAGAAAGCCTCTTGCATTGCATGAAGCAGCGGTTCCCTGGTCTCCCACAAACAACCTTAGATATGAGCAAAATTCAGTATAACAAGgttcactttaagccactgagtatttttgttctattattgcatttcattttctatcta-atactcaattaattaaatttaacatttatttag----------