1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TAACATGTAAGATTCGACTTCTAAAATCGCCACATGATACCGTGGAATTAGCCAGACGAATTGAGAAAACTGGTGTTTCTGCTCTTGCAGTCCATGGAAGgtaaaatctccaagtcctgtcccttttcctggacctttgtttctctagtgtgaacaaatattgtcattttgttttcatgaggcagttattctcattgatg...
species | Glycine max |
transcript | GLYMA01G23820.3 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GCCAGACGAATTGAGAAAACTGGTGTTTCTGCTCTTGCAGTCCATGGAAG AAAAGTCCCAGATAGGCCCAGAGATCCTGCTAAGTGGAATGAAATCGCTGAEST: gi|151403610|gb|EV273420.1|EV273420
genomic: GCCAGACGAATTGAGAAAACTGGTGTTTCTGCTCTTGCAGTCCATGGAAGgtaaaatctc ... ctatttacagAAAAGTCCCAGATAGGCCCAGAGATCCTGCTAAGTGGAATGAAATCGCTGA
EST: GCCAGACGAATTGAGAAAACTGGTGTTTCTGCTCTTGCAGTCCATGGAAG AAAAGTCCCAGATAGGCCCAGAGATCCTGCTAAGTGGAATGAAATCGCTGAEST: gi|21600377|gb|BQ610708.1|BQ610708
genomic: GCCAGACGAATTGAGAAAACTGGTGTTTCTGCTCTTGCAGTCCATGGAAGgtaaaatctc ... ctatttacagAAAAGTCCCAGATAGGCCCAGAGATCCTGCTAAGTGGAATGAAATCGCTGA
EST: GCCAGACGAATTGAGAAAACTGGTGTTTCTGCTCTTGCAGTCCATGGAAG AAAAGTCCCAGATAGGCCCAGAGATCCTGCTAAGTGGAATGAAATCGCTGA
genomic: GCCAGACGAATTGAGAAAACTGGTGTTTCTGCTCTTGCAGTCCATGGAAGgtaaaatctc ... ctatttacagAAAAGTCCCAGATAGGCCCAGAGATCCTGCTAAGTGGAATGAAATCGCTGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TAACATGTAAGATTCGACTTCTAAAATCGCCACATGATACCGTGGAATTAGCCAGACGAATTGAGAAAACTGGTGTTTCTGCTCTTGCAGTCCATGGAAGgtaaaatctccaagtcctgtcccttttcctggacctttgtttctctagtgtgaacaaatattgtcattttgttttcatgaggcagttattctcattgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cccttttc