1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
AAGTAAGTCTCATTCAAAAGAAAAAGATGGGGAAGAAAATGCCTTTGATGAAGATTACCAAGATGAAGACAATGACGATGTATCAAACATTGAGGTTAAGgtaatgttatctagtgtgcagcttgatatgcattcagtttttacctaaatgtattttggtttttggtctttctgtggtatctttgactctgcttttcatggtttttgcag
species | Glycine max |
transcript | GLYMA01G22680.3 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AAGATTACCAAGATGAAGACAATGACGATGTATCAAACATTGAGGTTAAG CAGCCTATTTATAACAAGGATGACTTCTTTGACTCGCTCTCTTCCAACGTGEST: gi|6502233|gb|AW203606.1|AW203606
genomic: AAGATTACCAAGATGAAGACAATGACGATGTATCAAACATTGAGGTTAAGgtaatgttat ... gtttttgcagCAGCCTATTTATAACAAGGATGACTTCTTTGACTCGCTCTCTTCCAACGTG
EST: TGACGATGTATCAAACATTGAGGTTAAG CAGCCTATTTATAACAAGGATGACTTCTTTGACTCGCTCTCTTCCAACGTGEST: gi|16343532|gb|BI969127.1|BI969127
genomic: TGACGATGTATCAAACATTGAGGTTAAGgtaatgttat ... gtttttgcagCAGCCTATTTATAACAAGGATGACTTCTTTGACTCGCTCTCTTCCAACGTG
EST: TGACGATGTATCAAACATTGAGGTTAAG CAGCCTATTTATAACAAGGATGACTTCNNNGACTCGCTCTCTTCCAACGTGEST: gi|208166349|gb|GD959157.1|GD959157
genomic: TGACGATGTATCAAACATTGAGGTTAAGgtaatgttat ... gtttttgcagCAGCCTATTTATAACAAGGATGACTTCTTTGACTCGCTCTCTTCCAACGTG
EST: AAGATTACCAAGATGAAGACAATGACGATGTATCAAACATTGAGGTTAAG C--C-TATTTATAACAAGGATGACTTCTTTGACTCGCTCTCTTCCAACGTGEST: gi|298181237|gb|HO022676.1|HO022676
genomic: AAGATTACCAAGATGAAGACAATGACGATGTATCAAACATTGAGGTTAAGgtaatgttat ... gtttttgcagCAGCCTATTTATAACAAGGATGACTTCTTTGACTCGCTCTCTTCCAACGTG
EST: AAGATTACCAAGATGAAGACAATGACGACGTATCAAACATTGAGGTTAAG CAGCCTATTTATAACAAGGATGACTTCTTTGACTCGCTCTCTTCCAACGTG
genomic: AAGATTACCAAGATGAAGACAATGACGATGTATCAAACATTGAGGTTAAGgtaatgttat ... gtttttgcagCAGCCTATTTATAACAAGGATGACTTCTTTGACTCGCTCTCTTCCAACGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGTAAGTCTCATTCAAAAGAAAAAGATGGGGAAGAAAATGCCTTTGATGAAGATTACCAAGATGAAGACAATGACGATGTATCAAACATTGAGGTTAAGgtaatgttatctagtgtgcagcttgatatgcattcagtttttacctaaatgtattttggtttttggtctttctgtggtatctttgactctgcttttcatggtttttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA