1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GCCTACACCTGTTACTGCCCCAGCTGCTCCTGCTTCTGCTGCAGCTCCTGCTCCTATATCTTCAGGCTCTGCTGTgtaatattcctttttctgttataattggaattaaccttttacttgttagatatctattttgaagatagaacattctttcaattcccattggtttattttaaatctggttaaaagaaactttgttgaagcag
species | Glycine max |
transcript | GLYMA01G20670.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GCTCCTGCTTCTGCTGCAGCTCCTGCTCCTATATCTTCAGGCTCTGCTGT GCCAGAGTCTGATATATATGGGCAGGCAGCATCTAATCTEST: gi|213598669|gb|DB964263.1|DB964263
genomic: GCTCCTGCTTCTGCTGCAGCTCCTGCTCCTATATCTTCAGGCTCTGCTGTgtaatattcc ... gttgaagcagGCCAGAGTCTGATATATATGGGCAGGCAGCATCTAATCT
EST: GCTCCTGCTTCTGCTGCAGCTCCTGCTCCTATATCTTCAGGCTCTGCTGT GCCAGAGTCTGATATATATGGGCAGGCAGCATCTAATCEST: gi|193672030|gb|FK616300.1|FK616300
genomic: GCTCCTGCTTCTGCTGCAGCTCCTGCTCCTATATCTTCAGGCTCTGCTGTgtaatattcc ... gttgaagcagGCCAGAGTCTGATATATATGGGCAGGCAGCATCTAATC
EST: GCTCCTGCTTCTGCTGCAGCTCCTGCTCCTATATCTTCAGGCTCTGCTGT GCCAGAGTCTGATATATATGGGCAGGCAGCATCTAATCTTGTTGCTGGEST: gi|21888703|gb|BQ741916.1|BQ741916
genomic: GCTCCTGCTTCTGCTGCAGCTCCTGCTCCTATATCTTCAGGCTCTGCTGTgtaatattcc ... gttgaagcagGCCAGAGTCTGATATATATGGGCAGGCAGCATCTAATCTTGTTGCTGG
EST: GCTCCTGCTTCTGCTGCAGCTCCTGCTCCTATATCTTCAGGCTCTGCTGT GCCAGAGTCTGATATATATGGGCAGGCAGCATCTAATCTTGTTGCTGGAAGEST: gi|207757079|gb|GD730037.1|GD730037
genomic: GCTCCTGCTTCTGCTGCAGCTCCTGCTCCTATATCTTCAGGCTCTGCTGTgtaatattcc ... gttgaagcagGCCAGAGTCTGATATATATGGGCAGGCAGCATCTAATCTTGTTGCTGGAAG
EST: GCTCCTGCTTCTGCTGCAGCTCCTGCTCCTATATCTTCAGGCTCTGCTGT GCCAGAGTCTGATATATATGGGCAGGCAGCATCTAATCTTGTTGCTGGAAGEST: gi|151395622|gb|EV265499.1|EV265499
genomic: GCTCCTGCTTCTGCTGCAGCTCCTGCTCCTATATCTTCAGGCTCTGCTGTgtaatattcc ... gttgaagcagGCCAGAGTCTGATATATATGGGCAGGCAGCATCTAATCTTGTTGCTGGAAG
EST: GCTCCTGCTTCTGCTGCAGCTCCTGCTCCTATATCTTCAGGCTCTGCTGT GCCAGAGTCTGATATATATGGGCAGGCAGCATCTAATCTTGTTGCTGGAAGEST: gi|192323620|gb|FK017486.1|FK017486
genomic: GCTCCTGCTTCTGCTGCAGCTCCTGCTCCTATATCTTCAGGCTCTGCTGTgtaatattcc ... gttgaagcagGCCAGAGTCTGATATATATGGGCAGGCAGCATCTAATCTTGTTGCTGGAAG
EST: GCTCCTGCTTCTGCTGCAGCTCCTGCTCCTATATCTTCAGGCTCTGCTGT GCCAGAGTCTGATATATATGGGCAGGCAGCATCTAATCTTGTTGCTGGAAGEST: gi|18040534|gb|BM308828.1|BM308828
genomic: GCTCCTGCTTCTGCTGCAGCTCCTGCTCCTATATCTTCAGGCTCTGCTGTgtaatattcc ... gttgaagcagGCCAGAGTCTGATATATATGGGCAGGCAGCATCTAATCTTGTTGCTGGAAG
EST: GCTCCTGCTTCTGCTGCAGCTCCTGCTCCTATATCTTCAGGCTCTGCTGT GCCAGAGTCTGATATATATGGGCAGGCAGCATCTAATCTTGGTGCTGGAEST: gi|9986013|gb|BE660019.1|BE660019
genomic: GCTCCTGCTTCTGCTGCAGCTCCTGCTCCTATATCTTCAGGCTCTGCTGTgtaatattcc ... gttgaagcagGCCAGAGTCTGATATATATGGGCAGGCAGCATCTAATCTTGTTGCTGGA
EST: GCTCCTGCTTCTGCTGCAGCTCCTGCTCCTATATCTTCANGCTCTGCTGT GCCAGAGTCTGATATATATGGGCAGGCAGCATCTAATCTTGGTGCTGGAAG
genomic: GCTCCTGCTTCTGCTGCAGCTCCTGCTCCTATATCTTCAGGCTCTGCTGTgtaatattcc ... gttgaagcagGCCAGAGTCTGATATATATGGGCAGGCAGCATCTAATCTTGTTGCTGGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCCTACACCTGTTACTGCCCCAGCTGCTCCTGCTTCTGCTGCAGCTCCTGCTCCTATATCTTCAGGCTCTGCTGTgtaatattcctttttctgttataattggaattaaccttttacttgttagatatctattttgaagatagaacattctttcaattcccattggtttattttaaatctggttaaaagaaactttgttgaagcag
- - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - CAGCTC