1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TAGTCATGTGTCTCCACCAAAGTCATCAAGCTTCTTTGCAGACTTTGGAATGGATGGTGGCTTTCCAAAGAAATCTGGGCCAAGTTCCTCCAAAGTGCAAgtaagccatatgcttgcaactttggtctctgcaatgttatctcttatgcatccagttagcatacaggattaagttatatataaatatctagtctacattc...
species | Glycine max |
transcript | GLYMA01G12340.2 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TGGATGGTGGCTTTCCAAAGAAATCTGGGCCAAGTTCCTCCAAAGTGCAA ATTCAGGAAACTGACGAAGCAAGAAGGAAGTTCTCAAATGCTAAATCTATTEST: gi|27424144|gb|CA935664.1|CA935664
genomic: TGGATGGTGGCTTTCCAAAGAAATCTGGGCCAAGTTCCTCCAAAGTGCAAgtaagccata ... tatccataagATTCAGGAAACTGACGAAGCAAGAAGGAAGTTCTCAAATGCTAAATCTATT
EST: TGGATGGTGGCTTTCCAAAGAAATCTGGGCCAAGTTCCTCCAAAGTGCAA ATTCAGGAAACTGACGAAGCAAGAAGGAAGTTCTCAAATGCTAAATCTATTEST: gi|254330187|gb|GR839740.1|GR839740
genomic: TGGATGGTGGCTTTCCAAAGAAATCTGGGCCAAGTTCCTCCAAAGTGCAAgtaagccata ... tatccataagATTCAGGAAACTGACGAAGCAAGAAGGAAGTTCTCAAATGCTAAATCTATT
EST: TGGATGGTGGCTTTCCAAAGAAATCTGGGCCAAGTTCCTCCAAAGTGCAA ATTCAGGAAACTGACGAAGCAAGAAGGAAGTTCTCAAATGCTAAATCTATTEST: gi|31309088|gb|CD394291.1|CD394291
genomic: TGGATGGTGGCTTTCCAAAGAAATCTGGGCCAAGTTCCTCCAAAGTGCAAgtaagccata ... tatccataagATTCAGGAAACTGACGAAGCAAGAAGGAAGTTCTCAAATGCTAAATCTATT
EST: TGGATGGTGGCTTTCCCAAGAGATCTGGGCCAAGTTCCTCCAAAGTGCGA ATTCAGGAAACTGACGAAGCCAGAAGGAAGTTCTCAAATGCTAAATCTATTEST: gi|208228828|gb|GE024234.1|GE024234
genomic: TGGATGGTGGCTTTCCAAAGAAATCTGGGCCAAGTTCCTCCAAAGTGCAAgtaagccata ... tatccataagATTCAGGAAACTGACGAAGCAAGAAGGAAGTTCTCAAATGCTAAATCTATT
EST: TGGATGGTGGCTTTCCAAAGAAATCTGGGCCAAGTTCCTCCAAAGTGCAA ATTCAGGAAGCTGACGAAGCAAGAAGGAAGTTCTCAAATGCTAAATCTATTEST: gi|254314431|gb|GR832016.1|GR832016
genomic: TGGATGGTGGCTTTCCAAAGAAATCTGGGCCAAGTTCCTCCAAAGTGCAAgtaagccata ... tatccataagATTCAGGAAACTGACGAAGCAAGAAGGAAGTTCTCAAATGCTAAATCTATT
EST: TGGATGGTGGCTTTCCAAAGAAATCTGGGCCAAGTTCCTCCAAAGTGCAA ATTCAGGAAACTGACGAAGCAAGAAGGAAGTTCTCAAATGCTAAATCTATTEST: gi|9564183|gb|BE473692.1|BE473692
genomic: TGGATGGTGGCTTTCCAAAGAAATCTGGGCCAAGTTCCTCCAAAGTGCAAgtaagccata ... tatccataagATTCAGGAAACTGACGAAGCAAGAAGGAAGTTCTCAAATGCTAAATCTATT
EST: TGGATGGTGGCTTTCCAAAGAAATCTGGGCCAAGTTCCTCCAAAGTGCAA ATTCAGGAAACTGACGAAGCAAGAAGGAAGTTCTCAAATGCTAAATCTATTEST: gi|10255901|gb|BE823667.1|BE823667
genomic: TGGATGGTGGCTTTCCAAAGAAATCTGGGCCAAGTTCCTCCAAAGTGCAAgtaagccata ... tatccataagATTCAGGAAACTGACGAAGCAAGAAGGAAGTTCTCAAATGCTAAATCTATT
EST: TGGATGGTGGCTTTCCAAAGAAATNNGGGCCAAGTTCCTCCAAAGTGCAA ATTCAGGAAACTGACGAAGCAAGAAGGAAGTTCTCAAATGCTAAATCTATTEST: gi|7590561|gb|AW706311.1|AW706311
genomic: TGGATGGTGGCTTTCCAAAGAAATCTGGGCCAAGTTCCTCCAAAGTGCAAgtaagccata ... tatccataagATTCAGGAAACTGACGAAGCAAGAAGGAAGTTCTCAAATGCTAAATCTATT
EST: TGGATGGTGGCTTTCCAAAGAAATCTGGGCCAAGTTCCTCCAAAGTGCAA ATTCAGGAAACTGACGAAGCAAGAAGGAAGTTCTCAAATGCTAAATCTATTEST: gi|193630140|gb|FK585309.1|FK585309
genomic: TGGATGGTGGCTTTCCAAAGAAATCTGGGCCAAGTTCCTCCAAAGTGCAAgtaagccata ... tatccataagATTCAGGAAACTGACGAAGCAAGAAGGAAGTTCTCAAATGCTAAATCTATT
EST: AAATCTGGGCCAAGTTCCTCCAAAGTGCAA ATTCAGGAAACTGACGAAGCAAGAAGGAAGTTCTCAAATGCTAAATCTATTEST: gi|8670479|gb|BE191586.1|BE191586
genomic: AAATCTGGGCCAAGTTCCTCCAAAGTGCAAgtaagccata ... tatccataagATTCAGGAAACTGACGAAGCAAGAAGGAAGTTCTCAAATGCTAAATCTATT
EST: TGGATGGTGGCTTTCCAAAGAAATCTGGGCCAAGTTCCTCCAAAGTGCAA ATTCAGGAAACTGACGAAGCAAGAAGGAAGTTCTCAAATGCTAAATCTATTEST: gi|31466806|gb|CD408834.1|CD408834
genomic: TGGATGGTGGCTTTCCAAAGAAATCTGGGCCAAGTTCCTCCAAAGTGCAAgtaagccata ... tatccataagATTCAGGAAACTGACGAAGCAAGAAGGAAGTTCTCAAATGCTAAATCTATT
EST: AGTTCCTCCAAAGTGCAA ATTCAGGAAACTGACGAAGCAAGAAGGAAGTTCTCAAATGCTAAATCTATTEST: gi|7028815|gb|AW458598.1|AW458598
genomic: AGTTCCTCCAAAGTGCAAgtaagccata ... tatccataagATTCAGGAAACTGACGAAGCAAGAAGGAAGTTCTCAAATGCTAAATCTATT
EST: TGGATGGTGGCTTTCCAAAGAAATCTGGGCCAAGTTCCTCCAAAGTGCAA ATTCAGGANACTGACGAAGCAAGAAGGAAGTTCTCAAATGCTAGATCTATGEST: gi|22524240|gb|BU083051.1|BU083051
genomic: TGGATGGTGGCTTTCCAAAGAAATCTGGGCCAAGTTCCTCCAAAGTGCAAgtaagccata ... tatccataagATTCAGGAAACTGACGAAGCAAGAAGGAAGTTCTCAAATGCTAAATCTATT
EST: TGGATGGTGGCTTTCCAAAGAAATCTGGGCCAAGTTCCTCCAAAGTGCAA ATTCAGGAAACTGACGAAGCAAGAAGGAAGTTCTCAAATGCTAAATCTATT
genomic: TGGATGGTGGCTTTCCAAAGAAATCTGGGCCAAGTTCCTCCAAAGTGCAAgtaagccata ... tatccataagATTCAGGAAACTGACGAAGCAAGAAGGAAGTTCTCAAATGCTAAATCTATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TAGTCATGTGTCTCCACCAAAGTCATCAAGCTTCTTTGCAGACTTTGGAATGGATGGTGGCTTTCCAAAGAAATCTGGGCCAAGTTCCTCCAAAGTGCAAgtaagccatatgcttgcaactttggtctctgcaatgttatctcttatgcatccagttagcatacaggattaagttatatataaatatctagtctacattc
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA